Typedef Pam40
PAM40 scoring matrix.

Defined in <seqan/score.h>
Signature typedef Score<int, ScoreMatrix<AminoAcid, ScoreSpecPam40> > Pam40;

Overview

A      6
R     -6    8
N     -3   -5    7
D     -3   -9    2    7
C     -6   -7   -9  -12    9
Q     -3   -1   -3   -2  -12    8
E     -2   -8   -1    3  -12    2    7
G     -1   -8   -2   -3   -8   -6   -3    6
H     -6   -1    1   -3   -7    1   -4   -8    9
I     -4   -5   -4   -6   -5   -7   -5   -9   -8    8
L     -5   -8   -6  -11  -13   -4   -8   -9   -5   -1    7
K     -6    1    0   -4  -12   -2   -4   -6   -5   -5   -7    6
M     -4   -3   -7   -9  -12   -3   -6   -7   -9    0    1   -1   11
F     -7   -8   -8  -13  -11  -11  -12   -8   -5   -2   -2  -12   -3    9
P     -1   -3   -5   -7   -7   -2   -5   -5   -3   -7   -6   -6   -7   -9    8
S      0   -2    0   -3   -2   -4   -4   -1   -5   -6   -7   -3   -5   -6   -1    6
T      0   -5   -1   -4   -7   -5   -5   -5   -6   -2   -6   -2   -3   -8   -3    1    7
W    -12   -1   -7  -13  -14  -11  -15  -13   -6  -12   -5  -10  -11   -4  -12   -4  -11   13
Y     -7   -9   -4  -10   -3  -10   -8  -12   -3   -5   -6   -8  -10    2  -12   -6   -6   -4   10
V     -2   -7   -7   -7   -5   -6   -6   -5   -6    2   -2   -8   -1   -7   -5   -5   -2  -14   -6    7
B     -3   -6    6    6  -11   -2    2   -2   -1   -5   -8   -2   -8   -9   -6   -1   -2   -9   -6   -7    6
Z     -2   -3   -2    2  -12    6    6   -4    0   -5   -6   -3   -4  -12   -3   -4   -5  -13   -8   -6    1    6
X     -3   -5   -3   -5   -8   -4   -4   -4   -4   -4   -5   -4   -4   -7   -4   -2   -3   -9   -7   -4   -4   -4   -4
*    -15  -15  -15  -15  -15  -15  -15  -15  -15  -15  -15  -15  -15  -15  -15  -15  -15  -15  -15  -15  -15  -15  -15    1

+      A    R    N    D    C    Q    E    G    H    I    L    K    M    F    P    S    T    W    Y    V    B    Z    X    *