1. SpecSpec

    1. Spec AbndmAlgoPattern

  2. ClassClass

    1. Class Accumulator

  3. SpecSpec

    1. Spec AdaptorIterator

  4. fn()fn()

    1. fn() addToProfile

  5. SpecSpec

    1. Spec AdjacencyIterator

  6. ClassClass

    1. Class AFScore

  7. ConceptConcept

    1. Concept AggregateConcept

  8. GroupGroup

    1. Group AggregateTags

  9. SpecSpec

    1. Spec AhoCorasickPattern

  10. ClassClass

    1. Class Align

  11. SpecSpec

    1. Spec AlignColIterator

  12. ClassClass

    1. Class AlignCols

  13. ClassClass

    1. Class AlignConfig

  14. ClassClass

    1. Class AlignedReadLayout

  15. ClassClass

    1. Class AlignedReadStoreElement

  16. GroupGroup

    1. Group AlignmentAlgorithmTags

  17. fn()fn()

    1. fn() alignmentEvaluation

  18. fn()fn()

    1. fn() alignmentFreeComparison

  19. SpecSpec

    1. Spec AlignmentGraph

  20. GroupGroup

    1. Group AlignmentGraphCombinationTags

  21. GroupGroup

    1. Group AlignmentGraphFormatTags

  22. ClassClass

    1. Class AlignmentStats

  23. ClassClass

    1. Class AlignQualityStoreElement

  24. ClassClass

    1. Class AlignTraceback

  25. ClassClass

    1. Class Allocator

  26. GroupGroup

    1. Group AllocatorUsageTags

  27. SpecSpec

    1. Spec AllocString

  28. Fn<>Fn<>

    1. Fn<> AllowsFastRandomAccess

  29. fn()fn()

    1. fn() allPairsShortestPath

  30. ConceptConcept

    1. Concept AlphabetConcept

  31. ClassClass

    1. Class AlphabetExpansion

  32. ConceptConcept

    1. Concept AlphabetWithGapsConcept

  33. ConceptConcept

    1. Concept AlphabetWithQualitiesConcept

  34. ConceptConcept

    1. Concept AlphabetWithUnknownValueConcept

  35. SpecSpec

    1. Spec AminoAcid

  36. SpecSpec

    1. Spec AnchorGaps

  37. ClassClass

    1. Class AnnotationStoreElement

  38. SpecSpec

    1. Spec AnnotationTreeIterator

  39. fn()fn()

    1. fn() appendSeqs

  40. GroupGroup

    1. Group ApproximateFinderSearchTypeTags

  41. ClassClass

    1. Class ArgParseArgument

  42. enumenum

    1. enum ArgParseArgument::ArgumentType

  43. SpecSpec

    1. Spec ArgParseOption

  44. ClassClass

    1. Class ArgumentParser

  45. enumenum

    1. enum ArgumentParser::ParseResult

  46. fn()fn()

    1. fn() arrayClearSpace

  47. fn()fn()

    1. fn() arrayConstruct

  48. fn()fn()

    1. fn() arrayConstructCopy

  49. fn()fn()

    1. fn() arrayConstructMove

  50. fn()fn()

    1. fn() arrayCopy

  51. fn()fn()

    1. fn() arrayCopyBackward

  52. fn()fn()

    1. fn() arrayCopyForward

  53. fn()fn()

    1. fn() arrayDestruct

  54. fn()fn()

    1. fn() arrayFill

  55. SpecSpec

    1. Spec ArrayGaps

  56. fn()fn()

    1. fn() arrayMove

  57. fn()fn()

    1. fn() arrayMoveBackward

  58. fn()fn()

    1. fn() arrayMoveForward

  59. SpecSpec

    1. Spec ArrayString

  60. GroupGroup

    1. Group AssertMacros

  61. ConceptConcept

    1. Concept AssignableConcept

  62. fn()fn()

    1. fn() assignCroppedSeqId

  63. fn()fn()

    1. fn() assignQual

  64. fn()fn()

    1. fn() assignQualId

  65. fn()fn()

    1. fn() assignQualities

  66. fn()fn()

    1. fn() assignSeq

  67. fn()fn()

    1. fn() assignSeqId

  68. fn()fn()

    1. fn() assignTagsBamToSam

  69. fn()fn()

    1. fn() assignTagsSamToBam

  70. SpecSpec

    1. Spec AsyncFile

  71. ClassClass

    1. Class AsyncRequest

  72. fn()fn()

    1. fn() atomicMax

  73. fn()fn()

    1. fn() atomicMin

  74. GroupGroup

    1. Group AtomicPrimitives

  75. SpecSpec

    1. Spec Automaton

  76. SpecSpec

    1. Spec AutoSeqFormat

  77. typedeftypedef

    1. typedef AutoSeqStreamFormat

  78. SpecSpec

    1. Spec AverageAccumulator

  79. ClassClass

    1. Class BadAlloc

  80. ClassClass

    1. Class BadCast

  81. SpecSpec

    1. Spec BaiBamIndex

  82. int xint x

    1. int x BAM_FLAG_SUPPLEMENTARY = 0x0800

  83. ClassClass

    1. Class BamAlignmentRecord

  84. enumenum

    1. enum BamFlags

  85. ClassClass

    1. Class BamHeader

  86. ClassClass

    1. Class BamHeaderRecord

  87. enumenum

    1. enum BamHeaderRecordType

  88. ClassClass

    1. Class BamIndex

  89. ClassClass

    1. Class BamIOContext

  90. enumenum

    1. enum BamSortOrder

  91. ClassClass

    1. Class BamStream

  92. enumenum

    1. enum BamStream::Format

  93. enumenum

    1. enum BamStream::OperationMode

  94. ClassClass

    1. Class BamTagsDict

  95. fn()fn()

    1. fn() bandedChainAlignment

  96. SpecSpec

    1. Spec BandedLocalAlignmentEnumerator

  97. ConceptConcept

    1. Concept BasicOutputIteratorConcept

  98. SpecSpec

    1. Spec Bed12Record

  99. SpecSpec

    1. Spec Bed3Record

  100. SpecSpec

    1. Spec Bed4Record

  101. SpecSpec

    1. Spec Bed5Record

  102. SpecSpec

    1. Spec Bed6Record

  103. ClassClass

    1. Class BedIOContext

  104. ClassClass

    1. Class BedRecord

  105. ClassClass

    1. Class BedRgb

  106. ClassClass

    1. Class BedStream

  107. enumenum

    1. enum BedStream::Mode

  108. fn()fn()

    1. fn() bellmanFordAlgorithm

  109. SpecSpec

    1. Spec BetaPdf

  110. SpecSpec

    1. Spec BfamPattern

  111. SpecSpec

    1. Spec BfsIterator

  112. SpecSpec

    1. Spec BgzfStream

  113. ConceptConcept

    1. Concept BidirectionalIteratorConcept

  114. SpecSpec

    1. Spec BitPackedPair

  115. SpecSpec

    1. Spec BitPackedTuple

  116. fn()fn()

    1. fn() bitScanForward

  117. fn()fn()

    1. fn() bitScanReverse

  118. SpecSpec

    1. Spec BlockString

  119. typedeftypedef

    1. typedef Blosum30

  120. typedeftypedef

    1. typedef Blosum45

  121. typedeftypedef

    1. typedef Blosum62

  122. typedeftypedef

    1. typedef Blosum80

  123. SpecSpec

    1. Spec BndmAlgoPattern

  124. GroupGroup

    1. Group BottomUp

  125. SpecSpec

    1. Spec BottomUpIterator

  126. fn()fn()

    1. fn() breadthFirstSearch

  127. fn()fn()

    1. fn() buildAlignmentGraph

  128. fn()fn()

    1. fn() bundle2

  129. ClassClass

    1. Class Bundle2

  130. fn()fn()

    1. fn() bundle3

  131. ClassClass

    1. Class Bundle3

  132. fn()fn()

    1. fn() bundle5

  133. ClassClass

    1. Class Bundle5

  134. Fn<>Fn<>

    1. Fn<> BytesPerValue

  135. SpecSpec

    1. Spec BZ2FileStream

  136. fn()fn()

    1. fn() calculateCovariance

  137. fn()fn()

    1. fn() calculateOverlapIndicator

  138. fn()fn()

    1. fn() calculatePeriodicity

  139. fn()fn()

    1. fn() calculateProbability

  140. fn()fn()

    1. fn() calculateVariance

  141. Fn<>Fn<>

    1. Fn<> Cargo

  142. SpecSpec

    1. Spec Caster

  143. SpecSpec

    1. Spec ChainedSeed

  144. fn()fn()

    1. fn() chainSeedsGlobally

  145. SpecSpec

    1. Spec CharArrayStream

  146. typedeftypedef

    1. typedef CharIterator

  147. typedeftypedef

    1. typedef CharString

  148. ClassClass

    1. Class CigarElement

  149. fn()fn()

    1. fn() clearAllBits

  150. fn()fn()

    1. fn() clearBit

  151. ClassClass

    1. Class ClusterReduction

  152. ConceptConcept

    1. Concept ComparableConcept

  153. Fn<>Fn<>

    1. Fn<> Comparator

  154. Fn<>Fn<>

    1. Fn<> CompareType

  155. Fn<>Fn<>

    1. Fn<> CompareTypeImpl

  156. fn()fn()

    1. fn() complement

  157. ClassClass

    1. Class CompressedSA

  158. GroupGroup

    1. Group CompressedSAFibres

  159. fn()fn()

    1. fn() computeAlignmentStats

  160. fn()fn()

    1. fn() computeSplitters

  161. SpecSpec

    1. Spec ConcatDirectStringSet

  162. ClassClass

    1. Class ConcatenatorManyToOne

  163. SpecSpec

    1. Spec ConcatVirtualIterator

  164. GroupGroup

    1. Group ConceptChecking

  165. ClassClass

    1. Class ConcurrentQueue

  166. fn()fn()

    1. fn() connectedComponents

  167. fn()fn()

    1. fn() consensusAlignment

  168. GroupGroup

    1. Group ConsensusCallingTags

  169. ClassClass

    1. Class ConsensusScoreSequenceEntry

  170. ConceptConcept

    1. Concept ContainerConcept

  171. GroupGroup

    1. Group ContainerIteratorTags

  172. ClassClass

    1. Class ContigFile

  173. ClassClass

    1. Class ContigStoreElement

  174. fn()fn()

    1. fn() convert

  175. Fn<>Fn<>

    1. Fn<> Convert

  176. fn()fn()

    1. fn() convertImpl

  177. fn()fn()

    1. fn() convertQuality

  178. ConceptConcept

    1. Concept CopyConstructibleConcept

  179. SpecSpec

    1. Spec Counter

  180. SpecSpec

    1. Spec CountingIdManager

  181. fn()fn()

    1. fn() countKmers

  182. fn()fn()

    1. fn() cpuTime

  183. fn()fn()

    1. fn() createBWTable

  184. fn()fn()

    1. fn() createInvSuffixArray

  185. fn()fn()

    1. fn() createLcpTable

  186. fn()fn()

    1. fn() createSuffixArray

  187. SpecSpec

    1. Spec CStyleString

  188. fn()fn()

    1. fn() cutNs

  189. ClassClass

    1. Class CyclicShape

  190. SpecSpec

    1. Spec D2AFScore

  191. SpecSpec

    1. Spec D2StarAFScore

  192. SpecSpec

    1. Spec D2zAFScore

  193. fn()fn()

    1. fn() dagShortestPath

  194. Fn<>Fn<>

    1. Fn<> DeepestSpec

  195. TagTag

    1. Tag Default

  196. ConceptConcept

    1. Concept DefaultConstructibleConcept

  197. Fn<>Fn<>

    1. Fn<> DefaultFindBeginPatternSpec

  198. Fn<>Fn<>

    1. Fn<> DefaultFinder

  199. Fn<>Fn<>

    1. Fn<> DefaultOverflowExplicit

  200. Fn<>Fn<>

    1. Fn<> DefaultOverflowImplicit

  201. Fn<>Fn<>

    1. Fn<> DefaultPattern

  202. Fn<>Fn<>

    1. Fn<> DefaultPrefixOrder

  203. fn()fn()

    1. fn() defaultRng

  204. ClassClass

    1. Class DefaultSeedConfig

  205. SpecSpec

    1. Spec DependentStringSet

  206. fn()fn()

    1. fn() depthFirstSearch

  207. ClassClass

    1. Class Deque

  208. ConceptConcept

    1. Concept DestructibleConcept

  209. Fn<>Fn<>

    1. Fn<> Device

  210. GroupGroup

    1. Group DfiIndexFibres

  211. GroupGroup

    1. Group DfsOrder

  212. SpecSpec

    1. Spec DfsPreorderIterator

  213. Fn<>Fn<>

    1. Fn<> Difference

  214. fn()fn()

    1. fn() dijkstra

  215. SpecSpec

    1. Spec DirectedGraph

  216. GroupGroup

    1. Group DistanceCalculationTags

  217. SpecSpec

    1. Spec Dna

  218. SpecSpec

    1. Spec Dna5

  219. typedeftypedef

    1. typedef Dna5Iterator

  220. SpecSpec

    1. Spec Dna5Q

  221. typedeftypedef

    1. typedef Dna5String

  222. typedeftypedef

    1. typedef Dna5StringComplement

  223. typedeftypedef

    1. typedef Dna5StringReverse

  224. typedeftypedef

    1. typedef Dna5StringReverseComplement

  225. typedeftypedef

    1. typedef DnaIterator

  226. SpecSpec

    1. Spec DnaQ

  227. typedeftypedef

    1. typedef DnaString

  228. typedeftypedef

    1. typedef DnaStringComplement

  229. typedeftypedef

    1. typedef DnaStringReverse

  230. typedeftypedef

    1. typedef DnaStringReverseComplement

  231. TagTag

    1. Tag DotDrawing

  232. SpecSpec

    1. Spec DoublePassRecordReader

  233. typedeftypedef

    1. typedef DPBand

  234. ClassClass

    1. Class DPBandConfig

  235. GroupGroup

    1. Group DPBandSwitch

  236. SpecSpec

    1. Spec DPSearchPattern

  237. SpecSpec

    1. Spec Echoer

  238. SpecSpec

    1. Spec EdgeIterator

  239. ClassClass

    1. Class EdgeStump

  240. TagTag

    1. Tag EditDistance

  241. SpecSpec

    1. Spec EditDistanceScore

  242. typedeftypedef

    1. typedef EditDistanceScoreTypedef

  243. SpecSpec

    1. Spec EditEnvironment

  244. GroupGroup

    1. Group EnableIfFunctionality

  245. fn()fn()

    1. fn() endsWith

  246. ConceptConcept

    1. Concept EqualityComparableConcept

  247. SpecSpec

    1. Spec Equidistant

  248. SpecSpec

    1. Spec ExactFragment

  249. SpecSpec

    1. Spec ExactReversableFragment

  250. ClassClass

    1. Class Exception

  251. GroupGroup

    1. Group ExceptionHandling

  252. fn()fn()

    1. fn() expectation

  253. fn()fn()

    1. fn() extendAlignment

  254. enumenum

    1. enum ExtensionDirection

  255. ClassClass

    1. Class ExternalConfig

  256. ClassClass

    1. Class ExternalConfigLarge

  257. ClassClass

    1. Class ExternalConfigSize

  258. ClassClass

    1. Class ExternalPropertyMap

  259. SpecSpec

    1. Spec ExternalString

  260. ClassClass

    1. Class FaiIndex

  261. GroupGroup

    1. Group FastaFastqIO

  262. Fn<>Fn<>

    1. Fn<> Fibre

  263. ClassClass

    1. Class File

  264. GroupGroup

    1. Group FileFormatTag

  265. GroupGroup

    1. Group FileFormatTokenization

  266. ClassClass

    1. Class FileMapping

  267. enumenum

    1. enum FileMappingAdvise

  268. enumenum

    1. enum FileMappingMode

  269. enumenum

    1. enum FileOpenMode

  270. SpecSpec

    1. Spec Filter

  271. Fn<>Fn<>

    1. Fn<> Find

  272. ClassClass

    1. Class Finder

  273. fn()fn()

    1. fn() findRepeats

  274. SpecSpec

    1. Spec Finite

  275. ConceptConcept

    1. Concept FiniteOrderedAlphabetConcept

  276. SpecSpec

    1. Spec FixedCyclicShape

  277. fn()fn()

    1. fn() floydWarshallAlgorithm

  278. SpecSpec

    1. Spec FMIndex

  279. GroupGroup

    1. Group FMIndexCompressionSpec

  280. ClassClass

    1. Class FMIndexConfig

  281. GroupGroup

    1. Group FMIndexFibres

  282. GroupGroup

    1. Group FMIndexRankDictionarySpec

  283. fn()fn()

    1. fn() fordFulkersonAlgorithm

  284. ConceptConcept

    1. Concept ForwardContainerConcept

  285. ConceptConcept

    1. Concept ForwardIteratorConcept

  286. ClassClass

    1. Class Fragment

  287. ClassClass

    1. Class FragmentStore

  288. enumenum

    1. enum FragmentStore::PredefinedAnnotationTypes

  289. ClassClass

    1. Class FunctorComplement

  290. ClassClass

    1. Class FunctorConvert

  291. ClassClass

    1. Class FunctorLowcase

  292. ClassClass

    1. Class FunctorUpcase

  293. ClassClass

    1. Class GapAnchor

  294. SpecSpec

    1. Spec GappedShape

  295. Fn<>Fn<>

    1. Fn<> GappedValueType

  296. ClassClass

    1. Class Gaps

  297. ClassClass

    1. Class GapsIterator

  298. GroupGroup

    1. Group GapsSpecTag

  299. SpecSpec

    1. Spec GenericCyclicShape

  300. SpecSpec

    1. Spec GenericShape

  301. SpecSpec

    1. Spec GenerousDependentStringSet

  302. TagTag

    1. Tag GeneticCode

  303. enumenum

    1. enum GeneticCodeSpec

  304. ClassClass

    1. Class GenomicRegion

  305. SpecSpec

    1. Spec GeometricPdf

  306. fn()fn()

    1. fn() getAutoSeqStreamFormatName

  307. fn()fn()

    1. fn() getBamTypeChar

  308. fn()fn()

    1. fn() getBamTypeSize

  309. Fn<>Fn<>

    1. Fn<> GetDefaultRng

  310. fn()fn()

    1. fn() getTerminalSize

  311. Fn<>Fn<>

    1. Fn<> GetValue

  312. GroupGroup

    1. Group GffIO

  313. ClassClass

    1. Class GffIOContext

  314. ClassClass

    1. Class GffRecord

  315. ClassClass

    1. Class GffStream

  316. enumenum

    1. enum GffStream::FileFormat

  317. enumenum

    1. enum GffStream::Mode

  318. SpecSpec

    1. Spec GlobalAlign

  319. fn()fn()

    1. fn() globalAlignment

  320. fn()fn()

    1. fn() globalAlignmentScore

  321. SpecSpec

    1. Spec GlobalChain

  322. GroupGroup

    1. Group GlobalChainingTags

  323. fn()fn()

    1. fn() globalMsaAlignment

  324. ClassClass

    1. Class Graph

  325. GroupGroup

    1. Group GraphIteratorTags

  326. ConceptConcept

    1. Concept GraphOverAlphabetConcept

  327. fn()fn()

    1. fn() guessFormat

  328. fn()fn()

    1. fn() guessFormatFromFilename

  329. fn()fn()

    1. fn() guessStreamFormat

  330. SpecSpec

    1. Spec GzFileStream

  331. TagTag

    1. Tag HammingDistance

  332. SpecSpec

    1. Spec HammingSimplePattern

  333. SpecSpec

    1. Spec HammingStringEnumerator

  334. SpecSpec

    1. Spec HardwiredShape

  335. Fn<>Fn<>

    1. Fn<> HasMoveConstructor

  336. fn()fn()

    1. fn() heaviestIncreasingSubsequence

  337. SpecSpec

    1. Spec HierarchicalPexPattern

  338. GroupGroup

    1. Group HmmAlgorithms

  339. SpecSpec

    1. Spec HmmGraph

  340. ClassClass

    1. Class Holder

  341. SpecSpec

    1. Spec HorspoolPattern

  342. ConceptConcept

    1. Concept HostedConcept

  343. Fn<>Fn<>

    1. Fn<> Id

  344. ClassClass

    1. Class IdManager

  345. fn()fn()

    1. fn() ignoreUnusedVariableWarning

  346. ClassClass

    1. Class Index

  347. SpecSpec

    1. Spec IndexDfi

  348. SpecSpec

    1. Spec IndexEsa

  349. GroupGroup

    1. Group IndexEsaFibres

  350. GroupGroup

    1. Group IndexFindAlgorithm

  351. SpecSpec

    1. Spec IndexQGram

  352. SpecSpec

    1. Spec IndexSa

  353. SpecSpec

    1. Spec IndexWotd

  354. SpecSpec

    1. Spec InfixSegment

  355. ConceptConcept

    1. Concept InputIteratorConcept

  356. ConceptConcept

    1. Concept IntegerConcept

  357. Fn<>Fn<>

    1. Fn<> IntegralForValue

  358. fn()fn()

    1. fn() integrateAlign

  359. ClassClass

    1. Class InternalMap

  360. ClassClass

    1. Class InternalPointerMap

  361. ClassClass

    1. Class InternalRawMap

  362. ClassClass

    1. Class IntervalAndCargo

  363. ClassClass

    1. Class IntervalTree

  364. ClassClass

    1. Class IntervalTreeNode

  365. GroupGroup

    1. Group IntervalTreeNodeTypeTags

  366. ClassClass

    1. Class IOError

  367. Fn<>Fn<>

    1. Fn<> Is

  368. fn()fn()

    1. fn() isalnum

  369. fn()fn()

    1. fn() isalpha

  370. fn()fn()

    1. fn() isAnsiColorTerminal

  371. fn()fn()

    1. fn() isBitSet

  372. fn()fn()

    1. fn() isblank

  373. Fn<>Fn<>

    1. Fn<> IsCharType

  374. fn()fn()

    1. fn() iscntrl

  375. Fn<>Fn<>

    1. Fn<> IsContiguous

  376. Fn<>Fn<>

    1. Fn<> IsDevice

  377. fn()fn()

    1. fn() isdigit

  378. fn()fn()

    1. fn() isgraph

  379. Fn<>Fn<>

    1. Fn<> IsInteger

  380. Fn<>Fn<>

    1. Fn<> IsIntegral

  381. Fn<>Fn<>

    1. Fn<> IsLightWeight

  382. fn()fn()

    1. fn() isprint

  383. Fn<>Fn<>

    1. Fn<> IsSameType

  384. Fn<>Fn<>

    1. Fn<> IsSequence

  385. Fn<>Fn<>

    1. Fn<> IsSimple

  386. fn()fn()

    1. fn() isspace

  387. fn()fn()

    1. fn() isTerminal

  388. Fn<>Fn<>

    1. Fn<> IsView

  389. ClassClass

    1. Class Iter

  390. ConceptConcept

    1. Concept IteratorAssociatedTypesConcept

  391. SpecSpec

    1. Spec IteratorProxy

  392. SpecSpec

    1. Spec Iupac

  393. typedeftypedef

    1. typedef IupacIterator

  394. typedeftypedef

    1. typedef IupacString

  395. ClassClass

    1. Class JoinConfig

  396. SpecSpec

    1. Spec Joiner

  397. GroupGroup

    1. Group JoinStrategiesTags

  398. SpecSpec

    1. Spec JournaledSet

  399. SpecSpec

    1. Spec JournaledString

  400. Fn<>Fn<>

    1. Fn<> Key

  401. fn()fn()

    1. fn() kruskalsAlgorithm

  402. Fn<>Fn<>

    1. Fn<> LENGTH

  403. ConceptConcept

    1. Concept LessThanComparableConcept

  404. TagTag

    1. Tag LevenshteinDistance

  405. SpecSpec

    1. Spec LevenshteinStringEnumerator

  406. ClassClass

    1. Class Lexical

  407. fn()fn()

    1. fn() lexicalCast

  408. fn()fn()

    1. fn() lexicalCast2

  409. ClassClass

    1. Class LF

  410. GroupGroup

    1. Group LFTableFibres

  411. ClassClass

    1. Class LibraryStoreElement

  412. ClassClass

    1. Class LimitRecordReaderInScope

  413. fn()fn()

    1. fn() localAlignment

  414. ClassClass

    1. Class LocalAlignmentEnumerator

  415. GroupGroup

    1. Group LocalChainingTags

  416. ClassClass

    1. Class LocalMatch

  417. ClassClass

    1. Class LocalMatchStore

  418. ClassClass

    1. Class LocalMatchStoreConfig

  419. fn()fn()

    1. fn() log2

  420. GroupGroup

    1. Group LogicalValuesTags

  421. GroupGroup

    1. Group LogicMetaprogramming

  422. GroupGroup

    1. Group LognormalConstructionTags

  423. SpecSpec

    1. Spec LogNormalPdf

  424. ClassClass

    1. Class LogProb

  425. fn()fn()

    1. fn() longestCommonSubsequence

  426. fn()fn()

    1. fn() longestIncreasingSubsequence

  427. ClassClass

    1. Class Loop

  428. ClassClass

    1. Class LoopReverse

  429. fn()fn()

    1. fn() lowerBoundAlignedReads

  430. Fn<>Fn<>

    1. Fn<> MakePacked

  431. Fn<>Fn<>

    1. Fn<> MakeSigned

  432. Fn<>Fn<>

    1. Fn<> MakeUnsigned

  433. ClassClass

    1. Class Map

  434. SpecSpec

    1. Spec MapperConfig

  435. SpecSpec

    1. Spec MapperConfigSize

  436. SpecSpec

    1. Spec MapperSpec

  437. ClassClass

    1. Class MarkovModel

  438. fn()fn()

    1. fn() matchRefinement

  439. ClassClass

    1. Class MatePairStoreElement

  440. ClassClass

    1. Class Matrix

  441. SpecSpec

    1. Spec MatrixScore

  442. SpecSpec

    1. Spec MaxRepeatsIterator

  443. Fn<>Fn<>

    1. Fn<> Member

  444. fn()fn()

    1. fn() memset

  445. SpecSpec

    1. Spec MersenneTwisterRng

  446. GroupGroup

    1. Group MetafunctionSwitch

  447. GroupGroup

    1. Group MetaprogrammingMath

  448. ClassClass

    1. Class MMapConfig

  449. SpecSpec

    1. Spec MMapString

  450. SpecSpec

    1. Spec ModCyclicShapeModifiedIterator

  451. SpecSpec

    1. Spec ModCyclicShapeModifiedString

  452. ClassClass

    1. Class ModifiedAlphabet

  453. ClassClass

    1. Class ModifiedIterator

  454. ClassClass

    1. Class ModifiedString

  455. SpecSpec

    1. Spec ModReverseIterator

  456. SpecSpec

    1. Spec ModReverseString

  457. SpecSpec

    1. Spec ModViewModifiedIterator

  458. SpecSpec

    1. Spec ModViewModifiedString

  459. TagTag

    1. Tag Move

  460. SpecSpec

    1. Spec MultiBfamPattern

  461. SpecSpec

    1. Spec MultiMemsIterator

  462. SpecSpec

    1. Spec MultipleShiftAndPattern

  463. SpecSpec

    1. Spec MultiPoolAllocator

  464. typedeftypedef

    1. typedef MultiSeqFile

  465. SpecSpec

    1. Spec MumsIterator

  466. TagTag

    1. Tag Murphy10

  467. ConceptConcept

    1. Concept MutableBidirectionalIteratorConcept

  468. ConceptConcept

    1. Concept MutableForwardIteratorConcept

  469. ConceptConcept

    1. Concept MutableRandomAccessIteratorConcept

  470. ConceptConcept

    1. Concept MutableRootedIteratorConcept

  471. ConceptConcept

    1. Concept MutableRootedRandomAccessIteratorConcept

  472. SpecSpec

    1. Spec MyersPattern

  473. typedeftypedef

    1. typedef MyersUkkonen

  474. typedeftypedef

    1. typedef MyersUkkonenBanded

  475. typedeftypedef

    1. typedef MyersUkkonenGlobal

  476. typedeftypedef

    1. typedef MyersUkkonenGlobalBanded

  477. SpecSpec

    1. Spec N2AFScore

  478. SpecSpec

    1. Spec Namer

  479. ClassClass

    1. Class NameStoreCache

  480. fn()fn()

    1. fn() njTree

  481. SpecSpec

    1. Spec NonHierarchicalPexPattern

  482. SpecSpec

    1. Spec NormalPdf

  483. TagTag

    1. Tag Nothing

  484. SpecSpec

    1. Spec OneGappedShape

  485. SpecSpec

    1. Spec OpenAddressingQGramIndex

  486. GroupGroup

    1. Group OpenAdressingTags

  487. SpecSpec

    1. Spec OracleBfamPattern

  488. SpecSpec

    1. Spec OracleMultiBfamPattern

  489. ConceptConcept

    1. Concept OrderedAlphabetConcept

  490. fn()fn()

    1. fn() orderOccurrences

  491. SpecSpec

    1. Spec OutEdgeIterator

  492. GroupGroup

    1. Group OverflowStrategyTags

  493. SpecSpec

    1. Spec OwnerStringSet

  494. SpecSpec

    1. Spec PackedPair

  495. SpecSpec

    1. Spec PackedString

  496. SpecSpec

    1. Spec PackedTriple

  497. ClassClass

    1. Class Pair

  498. GroupGroup

    1. Group PairwiseLocalAlignmentAlgorithms

  499. typedeftypedef

    1. typedef Pam120

  500. typedeftypedef

    1. typedef Pam200

  501. typedeftypedef

    1. typedef Pam250

  502. typedeftypedef

    1. typedef Pam40

  503. GroupGroup

    1. Group ParallelismTags

  504. fn()fn()

    1. fn() partialSum

  505. ClassClass

    1. Class Pattern

  506. ClassClass

    1. Class Pdf

  507. typedeftypedef

    1. typedef Peptide

  508. typedeftypedef

    1. typedef PeptideIterator

  509. SpecSpec

    1. Spec PexPattern

  510. SpecSpec

    1. Spec PigeonholeFinder

  511. ClassClass

    1. Class PigeonholeParameters

  512. SpecSpec

    1. Spec PigeonholePattern

  513. ClassClass

    1. Class Pipe

  514. SpecSpec

    1. Spec PizzaChiliIndex

  515. GroupGroup

    1. Group PizzaChiliIndexFibres

  516. GroupGroup

    1. Group PizzaChiliIndexTags

  517. SpecSpec

    1. Spec PizzaChiliString

  518. #define#define

    1. #define PLATFORM_CUDA

  519. #define#define

    1. #define PLATFORM_GCC

  520. #define#define

    1. #define PLATFORM_WINDOWS

  521. #define#define

    1. #define PLATFORM_WINDOWS_MINGW

  522. ClassClass

    1. Class PointAndCargo

  523. ClassClass

    1. Class Pool

  524. SpecSpec

    1. Spec PoolConfig

  525. SpecSpec

    1. Spec PoolConfigSize

  526. SpecSpec

    1. Spec PoolSpec

  527. fn()fn()

    1. fn() popCount

  528. Fn<>Fn<>

    1. Fn<> Position

  529. GroupGroup

    1. Group PositionCalculation

  530. SpecSpec

    1. Spec PositionIterator

  531. GroupGroup

    1. Group PrefixOrderTags

  532. SpecSpec

    1. Spec PrefixSegment

  533. fn()fn()

    1. fn() primsAlgorithm

  534. fn()fn()

    1. fn() printDebugLevel

  535. SpecSpec

    1. Spec PriorityHeap

  536. ClassClass

    1. Class PriorityType

  537. ClassClass

    1. Class ProfileChar

  538. SpecSpec

    1. Spec ProfileSeqFracScore

  539. SpecSpec

    1. Spec ProfileSeqScore

  540. fn()fn()

    1. fn() progressiveAlignment

  541. ClassClass

    1. Class Proxy

  542. GroupGroup

    1. Group QGramIndexFibres

  543. ConceptConcept

    1. Concept RandomAccessContainerConcept

  544. ConceptConcept

    1. Concept RandomAccessIteratorConcept

  545. ClassClass

    1. Class RankDictionary

  546. GroupGroup

    1. Group RankDictionaryFibres

  547. ClassClass

    1. Class RankSupportBitString

  548. GroupGroup

    1. Group RankSupportBitStringFibres

  549. fn()fn()

    1. fn() readFasta

  550. ClassClass

    1. Class ReadStoreElement

  551. fn()fn()

    1. fn() reAlign

  552. fn()fn()

    1. fn() reAlignment

  553. ClassClass

    1. Class RecordReader

  554. SpecSpec

    1. Spec ReducedAminoAcid

  555. Fn<>Fn<>

    1. Fn<> Reference

  556. Fn<>Fn<>

    1. Fn<> RemoveConst

  557. Fn<>Fn<>

    1. Fn<> RemoveReference

  558. Fn<>Fn<>

    1. Fn<> RemoveView

  559. ClassClass

    1. Class Repeat

  560. fn()fn()

    1. fn() reverse

  561. fn()fn()

    1. fn() reverseComplement

  562. ConceptConcept

    1. Concept ReversibleContainerConcept

  563. ClassClass

    1. Class RightArrayBinaryTree

  564. GroupGroup

    1. Group RightArrayBinaryTreeFibres

  565. SpecSpec

    1. Spec RightArrayBinaryTreeIterator

  566. SpecSpec

    1. Spec Rna

  567. SpecSpec

    1. Spec Rna5

  568. typedeftypedef

    1. typedef Rna5Iterator

  569. typedeftypedef

    1. typedef Rna5String

  570. typedeftypedef

    1. typedef Rna5StringComplement

  571. typedeftypedef

    1. typedef Rna5StringReverse

  572. typedeftypedef

    1. typedef Rna5StringReverseComplement

  573. typedeftypedef

    1. typedef RnaIterator

  574. typedeftypedef

    1. typedef RnaString

  575. typedeftypedef

    1. typedef RnaStringComplement

  576. typedeftypedef

    1. typedef RnaStringReverse

  577. typedeftypedef

    1. typedef RnaStringReverseComplement

  578. ClassClass

    1. Class Rng

  579. SpecSpec

    1. Spec RngFunctor

  580. ConceptConcept

    1. Concept RootedIteratorConcept

  581. ConceptConcept

    1. Concept RootedRandomAccessIteratorConcept

  582. ClassClass

    1. Class RuntimeError

  583. GroupGroup

    1. Group SamBamIO

  584. SpecSpec

    1. Spec Sampler

  585. Fn<>Fn<>

    1. Fn<> SAValue

  586. ClassClass

    1. Class Score

  587. ClassClass

    1. Class Seed

  588. ClassClass

    1. Class SeedDiagonal

  589. GroupGroup

    1. Group SeedExtensionTags

  590. ClassClass

    1. Class SeedSet

  591. ClassClass

    1. Class Segment

  592. ConceptConcept

    1. Concept SegmentableConcept

  593. GroupGroup

    1. Group SegmentMatchGenerationTags

  594. ClassClass

    1. Class SentinelRankDictionary

  595. GroupGroup

    1. Group SentinelRankDictionaryFibres

  596. #define#define

    1. #define SEQAN_CXX11_STANDARD

  597. #define#define

    1. #define SEQAN_DEVICE

  598. #define#define

    1. #define SEQAN_ENABLE_PARALLELISM

  599. #define#define

    1. #define SEQAN_GLOBAL

  600. #define#define

    1. #define SEQAN_HAS_BZIP2

  601. #define#define

    1. #define SEQAN_HAS_ZLIB

  602. #define#define

    1. #define SEQAN_HOST

  603. #define#define

    1. #define SEQAN_HOST_DEVICE

  604. #define#define

    1. #define SEQAN_IS_32_BIT

  605. #define#define

    1. #define SEQAN_IS_64_BIT

  606. #define#define

    1. #define SEQAN_OMP_PRAGMA

  607. #define#define

    1. #define SEQAN_PATH_TO_ROOT

  608. #define#define

    1. #define SEQAN_TEMP_FILENAME

  609. typedeftypedef

    1. typedef SeqStreamFormats

  610. ConceptConcept

    1. Concept SequenceConcept

  611. ClassClass

    1. Class SequenceOutputOptions

  612. ClassClass

    1. Class SequenceStream

  613. enumenum

    1. enum SequenceStream::FileFormat

  614. enumenum

    1. enum SequenceStream::FileType

  615. enumenum

    1. enum SequenceStream::OperationMode

  616. fn()fn()

    1. fn() setBit

  617. fn()fn()

    1. fn() setBitTo

  618. SpecSpec

    1. Spec SetHorspoolPattern

  619. ClassClass

    1. Class Shape

  620. fn()fn()

    1. fn() shareResources

  621. SpecSpec

    1. Spec ShiftAndPattern

  622. SpecSpec

    1. Spec Shifter

  623. SpecSpec

    1. Spec ShiftOrPattern

  624. fn()fn()

    1. fn() shuffle

  625. ConceptConcept

    1. Concept SignedIntegerConcept

  626. SpecSpec

    1. Spec SimpleAllocator

  627. SpecSpec

    1. Spec SimpleHolder

  628. SpecSpec

    1. Spec SimplePattern

  629. SpecSpec

    1. Spec SimpleScore

  630. typedeftypedef

    1. typedef SimpleScoreTypedef

  631. SpecSpec

    1. Spec SimpleSeed

  632. SpecSpec

    1. Spec SimpleShape

  633. ClassClass

    1. Class SimpleType

  634. SpecSpec

    1. Spec SinglePassRecordReader

  635. SpecSpec

    1. Spec SinglePoolAllocator

  636. Fn<>Fn<>

    1. Fn<> Size

  637. SpecSpec

    1. Spec Skiplist

  638. fn()fn()

    1. fn() sortAlignedReads

  639. GroupGroup

    1. Group SortAlignedReadTags

  640. SpecSpec

    1. Spec SorterConfig

  641. SpecSpec

    1. Spec SorterConfigSize

  642. SpecSpec

    1. Spec SorterSpec

  643. SpecSpec

    1. Spec Source

  644. ClassClass

    1. Class SparseString

  645. GroupGroup

    1. Group SparseStringFibres

  646. Fn<>Fn<>

    1. Fn<> Spec

  647. fn()fn()

    1. fn() split

  648. fn()fn()

    1. fn() splitAlignment

  649. fn()fn()

    1. fn() splitEmblHeader

  650. fn()fn()

    1. fn() splitGenBankHeader

  651. fn()fn()

    1. fn() splitString

  652. ClassClass

    1. Class Splitter

  653. GroupGroup

    1. Group StandardIntegers

  654. fn()fn()

    1. fn() startsWith

  655. SpecSpec

    1. Spec StdAdaptorIterator

  656. SpecSpec

    1. Spec StoreIntervalsIntervalTreeNode

  657. SpecSpec

    1. Spec StorePointsOnlyIntervalTreeNode

  658. ClassClass

    1. Class Stream

  659. ConceptConcept

    1. Concept StreamConcept

  660. GroupGroup

    1. Group StreamFeatureTags

  661. ClassClass

    1. Class String

  662. SpecSpec

    1. Spec StringDoublePassRecordReader

  663. ClassClass

    1. Class StringEnumerator

  664. ClassClass

    1. Class StringSet

  665. SpecSpec

    1. Spec StringSinglePassRecordReader

  666. fn()fn()

    1. fn() stringToStringSet

  667. ConceptConcept

    1. Concept StringTreeConcept

  668. fn()fn()

    1. fn() stronglyConnectedComponents

  669. SpecSpec

    1. Spec SuffixSegment

  670. fn()fn()

    1. fn() sum

  671. fn()fn()

    1. fn() sumOfPairsScore

  672. SpecSpec

    1. Spec SuperMaxRepeatsFastIterator

  673. SpecSpec

    1. Spec SuperMaxRepeatsIterator

  674. SpecSpec

    1. Spec SwiftFinder

  675. SpecSpec

    1. Spec SwiftLocalFinder

  676. SpecSpec

    1. Spec SwiftLocalPattern

  677. ClassClass

    1. Class SwiftParameters

  678. SpecSpec

    1. Spec SwiftPattern

  679. SpecSpec

    1. Spec SwiftSemiGlobalFinder

  680. SpecSpec

    1. Spec SwiftSemiGlobalPattern

  681. SpecSpec

    1. Spec SyncFile

  682. fn()fn()

    1. fn() sysTime

  683. ClassClass

    1. Class Tag

  684. ClassClass

    1. Class TagList

  685. ClassClass

    1. Class TagSelector

  686. fn()fn()

    1. fn() testAllOnes

  687. fn()fn()

    1. fn() testAllZeros

  688. GroupGroup

    1. Group TestSystemMacros

  689. ConceptConcept

    1. Concept TextConcept

  690. SpecSpec

    1. Spec TightDependentStringSet

  691. enumenum

    1. enum TokenizeResult

  692. fn()fn()

    1. fn() toLower

  693. ClassClass

    1. Class ToolDoc

  694. GroupGroup

    1. Group TopDown

  695. SpecSpec

    1. Spec TopDownHistoryIterator

  696. SpecSpec

    1. Spec TopDownIterator

  697. fn()fn()

    1. fn() topologicalSort

  698. ClassClass

    1. Class ToStdAllocator

  699. fn()fn()

    1. fn() toUpper

  700. typedeftypedef

    1. typedef TraceBack

  701. fn()fn()

    1. fn() transitiveClosure

  702. fn()fn()

    1. fn() translate

  703. enumenum

    1. enum TranslationFrames

  704. SpecSpec

    1. Spec Tree

  705. SpecSpec

    1. Spec TrieBfamPattern

  706. ClassClass

    1. Class Triple

  707. fn()fn()

    1. fn() tripletLibraryExtension

  708. SpecSpec

    1. Spec TristateHolder

  709. ClassClass

    1. Class Tuple

  710. SpecSpec

    1. Spec Tupler

  711. fn()fn()

    1. fn() TView

  712. SpecSpec

    1. Spec TwoLevelRankDictionary

  713. TagTag

    1. Tag Ucsc

  714. TagTag

    1. Tag UcscIsoforms

  715. SpecSpec

    1. Spec UnbandedLocalAlignmentEnumerator

  716. SpecSpec

    1. Spec UndirectedGraph

  717. SpecSpec

    1. Spec UngappedShape

  718. typedeftypedef

    1. typedef UnicodeString

  719. SpecSpec

    1. Spec UniformPdf

  720. ClassClass

    1. Class UnionFind

  721. ConceptConcept

    1. Concept UnsignedIntegerConcept

  722. GroupGroup

    1. Group UpgmaConfiguratorTags

  723. fn()fn()

    1. fn() upgmaTree

  724. fn()fn()

    1. fn() upperBoundAlignedReads

  725. Fn<>Fn<>

    1. Fn<> Value

  726. fn()fn()

    1. fn() valueConstruct

  727. fn()fn()

    1. fn() valueDestruct

  728. fn()fn()

    1. fn() variance

  729. ClassClass

    1. Class VcfHeader

  730. ClassClass

    1. Class VcfHeaderRecord

  731. GroupGroup

    1. Group VcfIO

  732. ClassClass

    1. Class VcfIOContext

  733. ClassClass

    1. Class VcfRecord

  734. ClassClass

    1. Class VcfStream

  735. enumenum

    1. enum VcfStream::Mode

  736. SpecSpec

    1. Spec VectorSet

  737. Fn<>Fn<>

    1. Fn<> VertexDescriptor

  738. SpecSpec

    1. Spec VertexIterator

  739. Fn<>Fn<>

    1. Fn<> View

  740. ClassClass

    1. Class VolatilePtr

  741. SpecSpec

    1. Spec VSTreeIterator

  742. typedeftypedef

    1. typedef Vtml200

  743. SpecSpec

    1. Spec WaveletTree

  744. GroupGroup

    1. Group WaveletTreeFibres

  745. fn()fn()

    1. fn() weaklyConnectedComponents

  746. Fn<>Fn<>

    1. Fn<> WEIGHT

  747. SpecSpec

    1. Spec WildShiftAndPattern

  748. SpecSpec

    1. Spec WordGraph

  749. GroupGroup

    1. Group WOTDIndexFibres

  750. SpecSpec

    1. Spec WuManberPattern

  751. fn()fn()

    1. fn() zscore