Class
LocalMatchStores information about local matches.
Stores information about local matches.
Defined in | <seqan/parse_lm.h> |
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Signature |
template <typename TId, typename TPosition>
class LocalMatch;
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Template Parameters
TId |
Type to use for subject/query id. |
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TPosition |
Type to use for storing positions. |
Member Variable Overview
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TPosition LocalMatch::queryBeginPos
Begin position of local match in the query. -
TPosition LocalMatch::queryEndPos
End position of local match in the query. -
TId LocalMatch::queryId
The id of the query. -
TPosition LocalMatch::subjectBeginPos
Begin position of local match in the subject. -
TPosition LocalMatch::subjectEndPos
End position of local match in the subject. -
TId LocalMatch::subjectId
The id of the subject.
Detailed Description
Matches on the reverse-complement are encoded by the begin position being greater than the end position.
Sequence names are not stored in LocalMatch objects but in the LocalMatchStore they belong to.
See Also
Member Variables Detail
TPosition LocalMatch::queryBeginPos
Begin position of local match in the query.
TPosition LocalMatch::queryEndPos
End position of local match in the query.
TId LocalMatch::queryId
The id of the query.
TPosition LocalMatch::subjectBeginPos
Begin position of local match in the subject.
TPosition LocalMatch::subjectEndPos
End position of local match in the subject.
TId LocalMatch::subjectId
The id of the subject.