Class LocalMatch
Stores information about local matches.

Defined in <seqan/parse_lm.h>
Signature template <typename TId, typename TPosition> class LocalMatch;

Template Parameters

TId Type to use for subject/query id.
TPosition Type to use for storing positions.

Member Variable Overview

Detailed Description

Matches on the reverse-complement are encoded by the begin position being greater than the end position.

Sequence names are not stored in LocalMatch objects but in the LocalMatchStore they belong to.

See Also

Member Variables Detail

TPosition LocalMatch::queryBeginPos

Begin position of local match in the query.

TPosition LocalMatch::queryEndPos

End position of local match in the query.

TId LocalMatch::queryId

The id of the query.

TPosition LocalMatch::subjectBeginPos

Begin position of local match in the subject.

TPosition LocalMatch::subjectEndPos

End position of local match in the subject.

TId LocalMatch::subjectId

The id of the subject.