1. SpecSpec

    1. Spec AbndmAlgoPattern

  2. ClassClass

    1. Class Accumulator

  3. SpecSpec

    1. Spec AdaptorIterator

  4. fn()fn()

    1. fn() addToProfile

  5. SpecSpec

    1. Spec AdjacencyIterator

  6. ClassClass

    1. Class AFScore

  7. ConceptConcept

    1. Concept AggregateConcept

  8. GroupGroup

    1. Group AggregateTags

  9. SpecSpec

    1. Spec AhoCorasickPattern

  10. ClassClass

    1. Class Align

  11. SpecSpec

    1. Spec AlignColIterator

  12. ClassClass

    1. Class AlignCols

  13. ClassClass

    1. Class AlignConfig

  14. ClassClass

    1. Class AlignedReadLayout

  15. ClassClass

    1. Class AlignedReadStoreElement

  16. GroupGroup

    1. Group AlignmentAlgorithmTags

  17. fn()fn()

    1. fn() alignmentEvaluation

  18. fn()fn()

    1. fn() alignmentFreeComparison

  19. SpecSpec

    1. Spec AlignmentGraph

  20. GroupGroup

    1. Group AlignmentGraphCombinationTags

  21. GroupGroup

    1. Group AlignmentGraphFormatTags

  22. ClassClass

    1. Class AlignmentStats

  23. ClassClass

    1. Class AlignQualityStoreElement

  24. ClassClass

    1. Class AlignTraceback

  25. ClassClass

    1. Class Allocator

  26. GroupGroup

    1. Group AllocatorUsageTags

  27. SpecSpec

    1. Spec AllocString

  28. Fn<>Fn<>

    1. Fn<> AllowsFastRandomAccess

  29. fn()fn()

    1. fn() allPairsShortestPath

  30. ConceptConcept

    1. Concept AlphabetConcept

  31. ClassClass

    1. Class AlphabetExpansion

  32. ConceptConcept

    1. Concept AlphabetWithGapsConcept

  33. ConceptConcept

    1. Concept AlphabetWithQualitiesConcept

  34. ConceptConcept

    1. Concept AlphabetWithUnknownValueConcept

  35. SpecSpec

    1. Spec AminoAcid

  36. SpecSpec

    1. Spec AnchorGaps

  37. ClassClass

    1. Class AnnotationStoreElement

  38. SpecSpec

    1. Spec AnnotationTreeIterator

  39. GroupGroup

    1. Group ApproximateFinderSearchTypeTags

  40. ClassClass

    1. Class ArgParseArgument

  41. enumenum

    1. enum ArgParseArgument::ArgumentType

  42. SpecSpec

    1. Spec ArgParseOption

  43. ClassClass

    1. Class ArgumentParser

  44. enumenum

    1. enum ArgumentParser::ParseResult

  45. fn()fn()

    1. fn() arrayClearSpace

  46. fn()fn()

    1. fn() arrayConstruct

  47. fn()fn()

    1. fn() arrayConstructCopy

  48. fn()fn()

    1. fn() arrayConstructMove

  49. fn()fn()

    1. fn() arrayCopy

  50. fn()fn()

    1. fn() arrayCopyBackward

  51. fn()fn()

    1. fn() arrayCopyForward

  52. fn()fn()

    1. fn() arrayDestruct

  53. fn()fn()

    1. fn() arrayFill

  54. SpecSpec

    1. Spec ArrayGaps

  55. fn()fn()

    1. fn() arrayMove

  56. fn()fn()

    1. fn() arrayMoveBackward

  57. fn()fn()

    1. fn() arrayMoveForward

  58. SpecSpec

    1. Spec ArrayString

  59. GroupGroup

    1. Group AssertMacros

  60. ConceptConcept

    1. Concept AssignableConcept

  61. fn()fn()

    1. fn() assignQualities

  62. fn()fn()

    1. fn() assignTagsBamToSam

  63. fn()fn()

    1. fn() assignTagsSamToBam

  64. SpecSpec

    1. Spec AsyncFile

  65. ClassClass

    1. Class AsyncRequest

  66. fn()fn()

    1. fn() atomicMax

  67. fn()fn()

    1. fn() atomicMin

  68. GroupGroup

    1. Group AtomicPrimitives

  69. SpecSpec

    1. Spec Automaton

  70. SpecSpec

    1. Spec AutoSeqFormat

  71. SpecSpec

    1. Spec AverageAccumulator

  72. ClassClass

    1. Class BadAlloc

  73. ClassClass

    1. Class BadCast

  74. SpecSpec

    1. Spec BadLexicalCast

  75. SpecSpec

    1. Spec BaiBamIndex

  76. varvar

    1. var BAM_FLAG_SUPPLEMENTARY = 0x0800

  77. ClassClass

    1. Class BamAlignmentRecord

  78. SpecSpec

    1. Spec BamFileIn

  79. SpecSpec

    1. Spec BamFileOut

  80. enumenum

    1. enum BamFlags

  81. ClassClass

    1. Class BamHeader

  82. ClassClass

    1. Class BamHeaderRecord

  83. enumenum

    1. enum BamHeaderRecordType

  84. ClassClass

    1. Class BamIndex

  85. ClassClass

    1. Class BamIOContext

  86. GroupGroup

    1. Group BamIOContextMemberTag

  87. enumenum

    1. enum BamSortOrder

  88. ClassClass

    1. Class BamTagsDict

  89. fn()fn()

    1. fn() bandedChainAlignment

  90. SpecSpec

    1. Spec BandedLocalAlignmentEnumerator

  91. Fn<>Fn<>

    1. Fn<> BasicStream

  92. SpecSpec

    1. Spec Bed12Record

  93. SpecSpec

    1. Spec Bed3Record

  94. SpecSpec

    1. Spec Bed4Record

  95. SpecSpec

    1. Spec Bed5Record

  96. SpecSpec

    1. Spec Bed6Record

  97. SpecSpec

    1. Spec BedFileIn

  98. SpecSpec

    1. Spec BedFileOut

  99. ClassClass

    1. Class BedRecord

  100. ClassClass

    1. Class BedRgb

  101. fn()fn()

    1. fn() bellmanFordAlgorithm

  102. SpecSpec

    1. Spec BetaPdf

  103. SpecSpec

    1. Spec BfamPattern

  104. SpecSpec

    1. Spec BfsIterator

  105. ConceptConcept

    1. Concept BidirectionalIteratorConcept

  106. ConceptConcept

    1. Concept BidirectionalStreamConcept

  107. SpecSpec

    1. Spec BitPackedPair

  108. SpecSpec

    1. Spec BitPackedTuple

  109. fn()fn()

    1. fn() bitScanForward

  110. fn()fn()

    1. fn() bitScanReverse

  111. SpecSpec

    1. Spec BlockString

  112. typedeftypedef

    1. typedef Blosum30

  113. typedeftypedef

    1. typedef Blosum45

  114. typedeftypedef

    1. typedef Blosum62

  115. typedeftypedef

    1. typedef Blosum80

  116. SpecSpec

    1. Spec BndmAlgoPattern

  117. GroupGroup

    1. Group BottomUp

  118. SpecSpec

    1. Spec BottomUpIterator

  119. fn()fn()

    1. fn() breadthFirstSearch

  120. ClassClass

    1. Class BufferedStream

  121. fn()fn()

    1. fn() buildAlignmentGraph

  122. fn()fn()

    1. fn() bundle2

  123. ClassClass

    1. Class Bundle2

  124. fn()fn()

    1. fn() bundle3

  125. ClassClass

    1. Class Bundle3

  126. fn()fn()

    1. fn() bundle5

  127. ClassClass

    1. Class Bundle5

  128. Fn<>Fn<>

    1. Fn<> BytesPerValue

  129. fn()fn()

    1. fn() calculateCovariance

  130. fn()fn()

    1. fn() calculateOverlapIndicator

  131. fn()fn()

    1. fn() calculatePeriodicity

  132. fn()fn()

    1. fn() calculateProbability

  133. fn()fn()

    1. fn() calculateVariance

  134. Fn<>Fn<>

    1. Fn<> Cargo

  135. SpecSpec

    1. Spec Caster

  136. SpecSpec

    1. Spec ChainedSeed

  137. fn()fn()

    1. fn() chainSeedsGlobally

  138. typedeftypedef

    1. typedef CharIterator

  139. typedeftypedef

    1. typedef CharString

  140. Fn<>Fn<>

    1. Fn<> Chunk

  141. ClassClass

    1. Class CigarElement

  142. fn()fn()

    1. fn() clearAllBits

  143. fn()fn()

    1. fn() clearBit

  144. ConceptConcept

    1. Concept ComparableConcept

  145. Fn<>Fn<>

    1. Fn<> Comparator

  146. Fn<>Fn<>

    1. Fn<> CompareType

  147. Fn<>Fn<>

    1. Fn<> CompareTypeImpl

  148. fn()fn()

    1. fn() complement

  149. ClassClass

    1. Class CompressedSA

  150. GroupGroup

    1. Group CompressedSAFibres

  151. fn()fn()

    1. fn() computeAlignmentStats

  152. fn()fn()

    1. fn() computeSplitters

  153. SpecSpec

    1. Spec ConcatDirectStringSet

  154. ClassClass

    1. Class ConcatenatorManyToOne

  155. SpecSpec

    1. Spec ConcatVirtualIterator

  156. GroupGroup

    1. Group ConceptChecking

  157. ClassClass

    1. Class ConcurrentQueue

  158. SpecSpec

    1. Spec ConcurrentSuspendableQueue

  159. fn()fn()

    1. fn() connectedComponents

  160. ClassClass

    1. Class ConsensusAlignerIllegalArgumentException

  161. fn()fn()

    1. fn() consensusAlignment

  162. ClassClass

    1. Class ConsensusAlignmentOptions

  163. ClassClass

    1. Class ConsensusScoreSequenceEntry

  164. ConceptConcept

    1. Concept ContainerConcept

  165. GroupGroup

    1. Group ContainerIteratorTags

  166. ClassClass

    1. Class ContigFile

  167. ClassClass

    1. Class ContigStoreElement

  168. fn()fn()

    1. fn() convert

  169. Fn<>Fn<>

    1. Fn<> Convert

  170. ConceptConcept

    1. Concept ConvertibleConcept

  171. fn()fn()

    1. fn() convertImpl

  172. fn()fn()

    1. fn() convertQuality

  173. ConceptConcept

    1. Concept CopyConstructibleConcept

  174. SpecSpec

    1. Spec Counter

  175. SpecSpec

    1. Spec CountingIdManager

  176. fn()fn()

    1. fn() countKmers

  177. fn()fn()

    1. fn() cpuTime

  178. fn()fn()

    1. fn() createBWTable

  179. fn()fn()

    1. fn() createInvSuffixArray

  180. fn()fn()

    1. fn() createLcpTable

  181. fn()fn()

    1. fn() createSuffixArray

  182. SpecSpec

    1. Spec CStyleString

  183. fn()fn()

    1. fn() cutNs

  184. ClassClass

    1. Class CyclicShape

  185. SpecSpec

    1. Spec D2AFScore

  186. SpecSpec

    1. Spec D2StarAFScore

  187. SpecSpec

    1. Spec D2zAFScore

  188. fn()fn()

    1. fn() dagShortestPath

  189. Fn<>Fn<>

    1. Fn<> DeepestSpec

  190. TagTag

    1. Tag Default

  191. ConceptConcept

    1. Concept DefaultConstructibleConcept

  192. Fn<>Fn<>

    1. Fn<> DefaultFindBeginPatternSpec

  193. Fn<>Fn<>

    1. Fn<> DefaultFinder

  194. Fn<>Fn<>

    1. Fn<> DefaultOverflowExplicit

  195. Fn<>Fn<>

    1. Fn<> DefaultOverflowImplicit

  196. Fn<>Fn<>

    1. Fn<> DefaultPattern

  197. Fn<>Fn<>

    1. Fn<> DefaultPrefixOrder

  198. fn()fn()

    1. fn() defaultRng

  199. ClassClass

    1. Class DefaultSeedConfig

  200. SpecSpec

    1. Spec DependentStringSet

  201. fn()fn()

    1. fn() depthFirstSearch

  202. ClassClass

    1. Class Deque

  203. ConceptConcept

    1. Concept DestructibleConcept

  204. Fn<>Fn<>

    1. Fn<> Device

  205. GroupGroup

    1. Group DfiIndexFibres

  206. GroupGroup

    1. Group DfsOrder

  207. SpecSpec

    1. Spec DfsPreorderIterator

  208. Fn<>Fn<>

    1. Fn<> Difference

  209. fn()fn()

    1. fn() dijkstra

  210. SpecSpec

    1. Spec DirectedGraph

  211. GroupGroup

    1. Group DirectionTags

  212. GroupGroup

    1. Group DistanceCalculationTags

  213. SpecSpec

    1. Spec Dna

  214. SpecSpec

    1. Spec Dna5

  215. typedeftypedef

    1. typedef Dna5Iterator

  216. SpecSpec

    1. Spec Dna5Q

  217. typedeftypedef

    1. typedef Dna5QString

  218. typedeftypedef

    1. typedef Dna5String

  219. typedeftypedef

    1. typedef Dna5StringComplement

  220. typedeftypedef

    1. typedef Dna5StringReverse

  221. typedeftypedef

    1. typedef Dna5StringReverseComplement

  222. typedeftypedef

    1. typedef DnaIterator

  223. SpecSpec

    1. Spec DnaQ

  224. typedeftypedef

    1. typedef DnaQString

  225. typedeftypedef

    1. typedef DnaString

  226. typedeftypedef

    1. typedef DnaStringComplement

  227. typedeftypedef

    1. typedef DnaStringReverse

  228. typedeftypedef

    1. typedef DnaStringReverseComplement

  229. TagTag

    1. Tag DotDrawing

  230. typedeftypedef

    1. typedef DPBand

  231. ClassClass

    1. Class DPBandConfig

  232. GroupGroup

    1. Group DPBandSwitch

  233. SpecSpec

    1. Spec DPSearchPattern

  234. SpecSpec

    1. Spec Echoer

  235. SpecSpec

    1. Spec EdgeIterator

  236. ClassClass

    1. Class EdgeStump

  237. TagTag

    1. Tag EditDistance

  238. SpecSpec

    1. Spec EditDistanceScore

  239. typedeftypedef

    1. typedef EditDistanceScoreTypedef

  240. SpecSpec

    1. Spec EditEnvironment

  241. ClassClass

    1. Class EmptyFieldError

  242. GroupGroup

    1. Group EnableIfFunctionality

  243. fn()fn()

    1. fn() endsWith

  244. ConceptConcept

    1. Concept EqualityComparableConcept

  245. SpecSpec

    1. Spec Equidistant

  246. SpecSpec

    1. Spec ExactFragment

  247. SpecSpec

    1. Spec ExactReversableFragment

  248. ClassClass

    1. Class Exception

  249. GroupGroup

    1. Group ExceptionHandling

  250. fn()fn()

    1. fn() expectation

  251. fn()fn()

    1. fn() extendAlignment

  252. enumenum

    1. enum ExtensionDirection

  253. ClassClass

    1. Class ExternalConfig

  254. ClassClass

    1. Class ExternalConfigLarge

  255. ClassClass

    1. Class ExternalConfigSize

  256. SpecSpec

    1. Spec ExternalString

  257. ClassClass

    1. Class FaiIndex

  258. Fn<>Fn<>

    1. Fn<> Fibre

  259. ClassClass

    1. Class File

  260. GroupGroup

    1. Group FileCompressionTags

  261. Fn<>Fn<>

    1. Fn<> FileExtensions

  262. GroupGroup

    1. Group FileFormats

  263. ClassClass

    1. Class FileMapping

  264. enumenum

    1. enum FileMappingAdvise

  265. enumenum

    1. enum FileMappingMode

  266. enumenum

    1. enum FileOpenMode

  267. SpecSpec

    1. Spec Filter

  268. Fn<>Fn<>

    1. Fn<> Find

  269. ClassClass

    1. Class Finder

  270. fn()fn()

    1. fn() findRepeats

  271. SpecSpec

    1. Spec Finite

  272. ConceptConcept

    1. Concept FiniteOrderedAlphabetConcept

  273. SpecSpec

    1. Spec FixedCyclicShape

  274. fn()fn()

    1. fn() floydWarshallAlgorithm

  275. SpecSpec

    1. Spec FMIndex

  276. GroupGroup

    1. Group FMIndexCompressionSpec

  277. ClassClass

    1. Class FMIndexConfig

  278. GroupGroup

    1. Group FMIndexFibres

  279. GroupGroup

    1. Group FMIndexRankDictionarySpec

  280. fn()fn()

    1. fn() fordFulkersonAlgorithm

  281. ClassClass

    1. Class FormattedFile

  282. ConceptConcept

    1. Concept FormattedFileHeaderConcept

  283. SpecSpec

    1. Spec FormattedFileIn

  284. SpecSpec

    1. Spec FormattedFileOut

  285. ConceptConcept

    1. Concept FormattedFileRecordConcept

  286. ClassClass

    1. Class FormattedNumber

  287. ConceptConcept

    1. Concept ForwardContainerConcept

  288. ConceptConcept

    1. Concept ForwardIteratorConcept

  289. ClassClass

    1. Class Fragment

  290. ClassClass

    1. Class FragmentStore

  291. enumenum

    1. enum FragmentStore::PredefinedAnnotationTypes

  292. ClassClass

    1. Class FunctorComplement

  293. ClassClass

    1. Class FunctorConvert

  294. ClassClass

    1. Class FunctorLowcase

  295. ClassClass

    1. Class FunctorUpcase

  296. ClassClass

    1. Class GapAnchor

  297. SpecSpec

    1. Spec GappedShape

  298. Fn<>Fn<>

    1. Fn<> GappedValueType

  299. ClassClass

    1. Class Gaps

  300. ClassClass

    1. Class GapsIterator

  301. GroupGroup

    1. Group GapsSpecTag

  302. SpecSpec

    1. Spec GenericCyclicShape

  303. SpecSpec

    1. Spec GenericShape

  304. SpecSpec

    1. Spec GenerousDependentStringSet

  305. TagTag

    1. Tag GeneticCode

  306. enumenum

    1. enum GeneticCodeSpec

  307. ClassClass

    1. Class GenomicRegion

  308. SpecSpec

    1. Spec GeometricPdf

  309. fn()fn()

    1. fn() getAbsolutePath

  310. fn()fn()

    1. fn() getBamTypeChar

  311. fn()fn()

    1. fn() getBamTypeSize

  312. Fn<>Fn<>

    1. Fn<> GetDefaultRng

  313. fn()fn()

    1. fn() getTerminalSize

  314. Fn<>Fn<>

    1. Fn<> GetValue

  315. SpecSpec

    1. Spec GffFileIn

  316. SpecSpec

    1. Spec GffFileOut

  317. ClassClass

    1. Class GffRecord

  318. SpecSpec

    1. Spec GlobalAlign

  319. fn()fn()

    1. fn() globalAlignment

  320. fn()fn()

    1. fn() globalAlignmentScore

  321. SpecSpec

    1. Spec GlobalChain

  322. GroupGroup

    1. Group GlobalChainingTags

  323. fn()fn()

    1. fn() globalMsaAlignment

  324. ClassClass

    1. Class Graph

  325. GroupGroup

    1. Group GraphIteratorTags

  326. ConceptConcept

    1. Concept GraphOverAlphabetConcept

  327. fn()fn()

    1. fn() guessFormatFromFilename

  328. TagTag

    1. Tag HammingDistance

  329. SpecSpec

    1. Spec HammingSimplePattern

  330. SpecSpec

    1. Spec HammingStringEnumerator

  331. SpecSpec

    1. Spec HardwiredShape

  332. Fn<>Fn<>

    1. Fn<> HasMoveConstructor

  333. fn()fn()

    1. fn() heaviestIncreasingSubsequence

  334. SpecSpec

    1. Spec HierarchicalPexPattern

  335. GroupGroup

    1. Group HmmAlgorithms

  336. SpecSpec

    1. Spec HmmGraph

  337. ClassClass

    1. Class Holder

  338. SpecSpec

    1. Spec HorspoolPattern

  339. ConceptConcept

    1. Concept HostedConcept

  340. Fn<>Fn<>

    1. Fn<> Id

  341. ClassClass

    1. Class IdManager

  342. fn()fn()

    1. fn() ignoreUnusedVariableWarning

  343. ClassClass

    1. Class Index

  344. SpecSpec

    1. Spec IndexDfi

  345. SpecSpec

    1. Spec IndexEsa

  346. GroupGroup

    1. Group IndexEsaFibres

  347. GroupGroup

    1. Group IndexFindAlgorithm

  348. SpecSpec

    1. Spec IndexQGram

  349. SpecSpec

    1. Spec IndexSa

  350. SpecSpec

    1. Spec IndexWotd

  351. SpecSpec

    1. Spec InfixSegment

  352. ConceptConcept

    1. Concept InputIteratorConcept

  353. ConceptConcept

    1. Concept InputStreamConcept

  354. SpecSpec

    1. Spec InputStreamIterator

  355. ConceptConcept

    1. Concept IntegerConcept

  356. Fn<>Fn<>

    1. Fn<> IntegralForValue

  357. fn()fn()

    1. fn() integrateAlign

  358. ClassClass

    1. Class InternalPointerPropertyMap

  359. ClassClass

    1. Class InternalPropertyMap

  360. ClassClass

    1. Class IntervalAndCargo

  361. ClassClass

    1. Class IntervalTree

  362. ClassClass

    1. Class IntervalTreeNode

  363. GroupGroup

    1. Group IntervalTreeNodeTypeTags

  364. ClassClass

    1. Class IOError

  365. Fn<>Fn<>

    1. Fn<> IosOpenMode

  366. Fn<>Fn<>

    1. Fn<> Is

  367. fn()fn()

    1. fn() isAnsiColorTerminal

  368. fn()fn()

    1. fn() isBitSet

  369. Fn<>Fn<>

    1. Fn<> IsCharType

  370. Fn<>Fn<>

    1. Fn<> IsContiguous

  371. Fn<>Fn<>

    1. Fn<> IsDevice

  372. Fn<>Fn<>

    1. Fn<> IsInteger

  373. Fn<>Fn<>

    1. Fn<> IsIntegral

  374. Fn<>Fn<>

    1. Fn<> IsLightWeight

  375. Fn<>Fn<>

    1. Fn<> IsSameType

  376. Fn<>Fn<>

    1. Fn<> IsSequence

  377. Fn<>Fn<>

    1. Fn<> IsSimple

  378. fn()fn()

    1. fn() isTerminal

  379. Fn<>Fn<>

    1. Fn<> IsView

  380. ClassClass

    1. Class Iter

  381. ConceptConcept

    1. Concept IteratorAssociatedTypesConcept

  382. SpecSpec

    1. Spec IteratorProxy

  383. SpecSpec

    1. Spec Iupac

  384. typedeftypedef

    1. typedef IupacIterator

  385. typedeftypedef

    1. typedef IupacString

  386. ClassClass

    1. Class JoinConfig

  387. SpecSpec

    1. Spec Joiner

  388. GroupGroup

    1. Group JoinStrategiesTags

  389. SpecSpec

    1. Spec JournaledSet

  390. SpecSpec

    1. Spec JournaledString

  391. Fn<>Fn<>

    1. Fn<> Key

  392. fn()fn()

    1. fn() kruskalsAlgorithm

  393. Fn<>Fn<>

    1. Fn<> LENGTH

  394. ConceptConcept

    1. Concept LessThanComparableConcept

  395. TagTag

    1. Tag LevenshteinDistance

  396. SpecSpec

    1. Spec LevenshteinStringEnumerator

  397. ClassClass

    1. Class Lexical

  398. fn()fn()

    1. fn() lexicalCast

  399. fn()fn()

    1. fn() lexicalCastWithException

  400. ClassClass

    1. Class LF

  401. GroupGroup

    1. Group LFTableFibres

  402. ClassClass

    1. Class LibraryStoreElement

  403. varvar

    1. var LibraryStoreElementstd

  404. fn()fn()

    1. fn() localAlignment

  405. ClassClass

    1. Class LocalAlignmentEnumerator

  406. GroupGroup

    1. Group LocalChainingTags

  407. ClassClass

    1. Class LocalMatch

  408. ClassClass

    1. Class LocalMatchStore

  409. ClassClass

    1. Class LocalMatchStoreConfig

  410. fn()fn()

    1. fn() log2

  411. GroupGroup

    1. Group LogicalValuesTags

  412. GroupGroup

    1. Group LogicMetaprogramming

  413. GroupGroup

    1. Group LognormalConstructionTags

  414. SpecSpec

    1. Spec LogNormalPdf

  415. ClassClass

    1. Class LogProb

  416. fn()fn()

    1. fn() longestCommonSubsequence

  417. fn()fn()

    1. fn() longestIncreasingSubsequence

  418. ClassClass

    1. Class Loop

  419. ClassClass

    1. Class LoopReverse

  420. fn()fn()

    1. fn() lowerBoundAlignedReads

  421. Fn<>Fn<>

    1. Fn<> MagicHeader

  422. Fn<>Fn<>

    1. Fn<> MakePacked

  423. Fn<>Fn<>

    1. Fn<> MakeSigned

  424. Fn<>Fn<>

    1. Fn<> MakeUnsigned

  425. ClassClass

    1. Class Map

  426. SpecSpec

    1. Spec MapperConfig

  427. SpecSpec

    1. Spec MapperConfigSize

  428. SpecSpec

    1. Spec MapperSpec

  429. ClassClass

    1. Class MarkovModel

  430. fn()fn()

    1. fn() matchRefinement

  431. ClassClass

    1. Class MatePairStoreElement

  432. ClassClass

    1. Class Matrix

  433. SpecSpec

    1. Spec MatrixScore

  434. SpecSpec

    1. Spec MaxRepeatsIterator

  435. Fn<>Fn<>

    1. Fn<> Member

  436. fn()fn()

    1. fn() memset

  437. SpecSpec

    1. Spec MersenneTwisterRng

  438. GroupGroup

    1. Group MetafunctionSwitch

  439. GroupGroup

    1. Group MetaprogrammingMath

  440. ClassClass

    1. Class MMapConfig

  441. SpecSpec

    1. Spec MMapString

  442. SpecSpec

    1. Spec ModCyclicShapeModifiedIterator

  443. SpecSpec

    1. Spec ModCyclicShapeModifiedString

  444. ClassClass

    1. Class ModifiedAlphabet

  445. ClassClass

    1. Class ModifiedIterator

  446. ClassClass

    1. Class ModifiedString

  447. SpecSpec

    1. Spec ModReverseIterator

  448. SpecSpec

    1. Spec ModReverseString

  449. SpecSpec

    1. Spec ModViewModifiedIterator

  450. SpecSpec

    1. Spec ModViewModifiedString

  451. TagTag

    1. Tag Move

  452. ClassClass

    1. Class MsaOptions

  453. SpecSpec

    1. Spec MultiBfamPattern

  454. SpecSpec

    1. Spec MultiMemsIterator

  455. SpecSpec

    1. Spec MultipleShiftAndPattern

  456. SpecSpec

    1. Spec MultiPoolAllocator

  457. SpecSpec

    1. Spec MumsIterator

  458. TagTag

    1. Tag Murphy10

  459. ConceptConcept

    1. Concept MutableBidirectionalIteratorConcept

  460. ConceptConcept

    1. Concept MutableForwardIteratorConcept

  461. ConceptConcept

    1. Concept MutableRandomAccessIteratorConcept

  462. ConceptConcept

    1. Concept MutableRootedIteratorConcept

  463. ConceptConcept

    1. Concept MutableRootedRandomAccessIteratorConcept

  464. SpecSpec

    1. Spec MyersPattern

  465. typedeftypedef

    1. typedef MyersUkkonen

  466. typedeftypedef

    1. typedef MyersUkkonenBanded

  467. typedeftypedef

    1. typedef MyersUkkonenGlobal

  468. typedeftypedef

    1. typedef MyersUkkonenGlobalBanded

  469. SpecSpec

    1. Spec N2AFScore

  470. SpecSpec

    1. Spec Namer

  471. ClassClass

    1. Class NameStoreCache

  472. fn()fn()

    1. fn() njTree

  473. SpecSpec

    1. Spec NonHierarchicalPexPattern

  474. SpecSpec

    1. Spec NormalPdf

  475. TagTag

    1. Tag Nothing

  476. ConceptConcept

    1. Concept NumberConcept

  477. SpecSpec

    1. Spec OneGappedShape

  478. SpecSpec

    1. Spec OpenAddressingQGramIndex

  479. GroupGroup

    1. Group OpenAdressingTags

  480. SpecSpec

    1. Spec OracleBfamPattern

  481. SpecSpec

    1. Spec OracleMultiBfamPattern

  482. ConceptConcept

    1. Concept OrderedAlphabetConcept

  483. fn()fn()

    1. fn() orderOccurrences

  484. SpecSpec

    1. Spec OutEdgeIterator

  485. ConceptConcept

    1. Concept OutputIteratorConcept

  486. ConceptConcept

    1. Concept OutputStreamConcept

  487. SpecSpec

    1. Spec OutputStreamIterator

  488. GroupGroup

    1. Group OverflowStrategyTags

  489. SpecSpec

    1. Spec OwnerStringSet

  490. SpecSpec

    1. Spec PackedPair

  491. SpecSpec

    1. Spec PackedString

  492. SpecSpec

    1. Spec PackedTriple

  493. ClassClass

    1. Class Pair

  494. GroupGroup

    1. Group PairwiseLocalAlignmentAlgorithms

  495. typedeftypedef

    1. typedef Pam120

  496. typedeftypedef

    1. typedef Pam200

  497. typedeftypedef

    1. typedef Pam250

  498. typedeftypedef

    1. typedef Pam40

  499. GroupGroup

    1. Group ParallelismTags

  500. ClassClass

    1. Class ParseError

  501. fn()fn()

    1. fn() partialSum

  502. ClassClass

    1. Class Pattern

  503. ClassClass

    1. Class Pdf

  504. typedeftypedef

    1. typedef Peptide

  505. typedeftypedef

    1. typedef PeptideIterator

  506. SpecSpec

    1. Spec PexPattern

  507. SpecSpec

    1. Spec PigeonholeFinder

  508. ClassClass

    1. Class PigeonholeParameters

  509. SpecSpec

    1. Spec PigeonholePattern

  510. ClassClass

    1. Class Pipe

  511. SpecSpec

    1. Spec PizzaChiliIndex

  512. GroupGroup

    1. Group PizzaChiliIndexFibres

  513. GroupGroup

    1. Group PizzaChiliIndexTags

  514. SpecSpec

    1. Spec PizzaChiliString

  515. #define#define

    1. #define PLATFORM_CUDA

  516. #define#define

    1. #define PLATFORM_GCC

  517. #define#define

    1. #define PLATFORM_WINDOWS

  518. #define#define

    1. #define PLATFORM_WINDOWS_MINGW

  519. ClassClass

    1. Class PointAndCargo

  520. ClassClass

    1. Class Pool

  521. SpecSpec

    1. Spec PoolConfig

  522. SpecSpec

    1. Spec PoolConfigSize

  523. SpecSpec

    1. Spec PoolSpec

  524. fn()fn()

    1. fn() popCount

  525. Fn<>Fn<>

    1. Fn<> Position

  526. GroupGroup

    1. Group PositionCalculation

  527. SpecSpec

    1. Spec PositionIterator

  528. GroupGroup

    1. Group PrefixOrderTags

  529. SpecSpec

    1. Spec PrefixSegment

  530. fn()fn()

    1. fn() primsAlgorithm

  531. fn()fn()

    1. fn() printDebugLevel

  532. SpecSpec

    1. Spec PriorityHeap

  533. ClassClass

    1. Class PriorityType

  534. ClassClass

    1. Class ProfileChar

  535. SpecSpec

    1. Spec ProfileSeqFracScore

  536. SpecSpec

    1. Spec ProfileSeqScore

  537. fn()fn()

    1. fn() progressiveAlignment

  538. ConceptConcept

    1. Concept PropertyMapConcept

  539. ClassClass

    1. Class Proxy

  540. GroupGroup

    1. Group QGramIndexFibres

  541. ConceptConcept

    1. Concept RandomAccessContainerConcept

  542. ConceptConcept

    1. Concept RandomAccessIteratorConcept

  543. ClassClass

    1. Class Range

  544. ClassClass

    1. Class RankDictionary

  545. GroupGroup

    1. Group RankDictionaryFibres

  546. ClassClass

    1. Class RankSupportBitString

  547. GroupGroup

    1. Group RankSupportBitStringFibres

  548. fn()fn()

    1. fn() readEmblHeader

  549. ClassClass

    1. Class ReadStoreElement

  550. fn()fn()

    1. fn() reAlign

  551. fn()fn()

    1. fn() reAlignment

  552. SpecSpec

    1. Spec ReducedAminoAcid

  553. Fn<>Fn<>

    1. Fn<> Reference

  554. Fn<>Fn<>

    1. Fn<> RemoveConst

  555. Fn<>Fn<>

    1. Fn<> RemovePointer

  556. Fn<>Fn<>

    1. Fn<> RemoveReference

  557. Fn<>Fn<>

    1. Fn<> RemoveView

  558. ClassClass

    1. Class Repeat

  559. fn()fn()

    1. fn() reverse

  560. fn()fn()

    1. fn() reverseComplement

  561. ConceptConcept

    1. Concept ReversibleContainerConcept

  562. ClassClass

    1. Class RightArrayBinaryTree

  563. GroupGroup

    1. Group RightArrayBinaryTreeFibres

  564. SpecSpec

    1. Spec RightArrayBinaryTreeIterator

  565. SpecSpec

    1. Spec Rna

  566. SpecSpec

    1. Spec Rna5

  567. typedeftypedef

    1. typedef Rna5Iterator

  568. typedeftypedef

    1. typedef Rna5String

  569. typedeftypedef

    1. typedef Rna5StringComplement

  570. typedeftypedef

    1. typedef Rna5StringReverse

  571. typedeftypedef

    1. typedef Rna5StringReverseComplement

  572. typedeftypedef

    1. typedef RnaIterator

  573. typedeftypedef

    1. typedef RnaString

  574. typedeftypedef

    1. typedef RnaStringComplement

  575. typedeftypedef

    1. typedef RnaStringReverse

  576. typedeftypedef

    1. typedef RnaStringReverseComplement

  577. ClassClass

    1. Class Rng

  578. SpecSpec

    1. Spec RngFunctor

  579. SpecSpec

    1. Spec RoiFileIn

  580. SpecSpec

    1. Spec RoiFileOut

  581. ConceptConcept

    1. Concept RootedIteratorConcept

  582. ConceptConcept

    1. Concept RootedRandomAccessIteratorConcept

  583. ClassClass

    1. Class RuntimeError

  584. SpecSpec

    1. Spec Sampler

  585. Fn<>Fn<>

    1. Fn<> SAValue

  586. ClassClass

    1. Class Score

  587. ClassClass

    1. Class Seed

  588. ClassClass

    1. Class SeedDiagonal

  589. GroupGroup

    1. Group SeedExtensionTags

  590. ClassClass

    1. Class SeedSet

  591. ClassClass

    1. Class Segment

  592. ConceptConcept

    1. Concept SegmentableConcept

  593. GroupGroup

    1. Group SegmentMatchGenerationTags

  594. ClassClass

    1. Class SentinelRankDictionary

  595. GroupGroup

    1. Group SentinelRankDictionaryFibres

  596. #define#define

    1. #define SEQAN_CXX11_STANDARD

  597. #define#define

    1. #define SEQAN_DEVICE

  598. #define#define

    1. #define SEQAN_ENABLE_PARALLELISM

  599. #define#define

    1. #define SEQAN_GLOBAL

  600. #define#define

    1. #define SEQAN_HAS_BZIP2

  601. #define#define

    1. #define SEQAN_HAS_ZLIB

  602. #define#define

    1. #define SEQAN_HOST

  603. #define#define

    1. #define SEQAN_HOST_DEVICE

  604. #define#define

    1. #define SEQAN_IS_32_BIT

  605. #define#define

    1. #define SEQAN_IS_64_BIT

  606. #define#define

    1. #define SEQAN_OMP_PRAGMA

  607. #define#define

    1. #define SEQAN_PATH_TO_ROOT

  608. #define#define

    1. #define SEQAN_TEMP_FILENAME

  609. SpecSpec

    1. Spec SeqFileIn

  610. SpecSpec

    1. Spec SeqFileOut

  611. ClassClass

    1. Class SequenceOutputOptions

  612. fn()fn()

    1. fn() setBit

  613. fn()fn()

    1. fn() setBitTo

  614. SpecSpec

    1. Spec SetHorspoolPattern

  615. ClassClass

    1. Class Shape

  616. fn()fn()

    1. fn() shareResources

  617. SpecSpec

    1. Spec ShiftAndPattern

  618. SpecSpec

    1. Spec Shifter

  619. SpecSpec

    1. Spec ShiftOrPattern

  620. fn()fn()

    1. fn() shuffle

  621. ConceptConcept

    1. Concept SignedIntegerConcept

  622. SpecSpec

    1. Spec SimpleAllocator

  623. SpecSpec

    1. Spec SimpleHolder

  624. SpecSpec

    1. Spec SimpleIntervalsFileIn

  625. SpecSpec

    1. Spec SimpleIntervalsFileInOut

  626. ClassClass

    1. Class SimpleIntervalsIOContext

  627. SpecSpec

    1. Spec SimplePattern

  628. SpecSpec

    1. Spec SimpleScore

  629. typedeftypedef

    1. typedef SimpleScoreTypedef

  630. SpecSpec

    1. Spec SimpleSeed

  631. SpecSpec

    1. Spec SimpleShape

  632. ClassClass

    1. Class SimpleType

  633. SpecSpec

    1. Spec SinglePoolAllocator

  634. Fn<>Fn<>

    1. Fn<> Size

  635. SpecSpec

    1. Spec Skiplist

  636. fn()fn()

    1. fn() sortAlignedReads

  637. GroupGroup

    1. Group SortAlignedReadTags

  638. SpecSpec

    1. Spec SorterConfig

  639. SpecSpec

    1. Spec SorterConfigSize

  640. SpecSpec

    1. Spec SorterSpec

  641. SpecSpec

    1. Spec Source

  642. ClassClass

    1. Class SparseString

  643. GroupGroup

    1. Group SparseStringFibres

  644. Fn<>Fn<>

    1. Fn<> Spec

  645. fn()fn()

    1. fn() splitAlignment

  646. fn()fn()

    1. fn() splitGenBankHeader

  647. ClassClass

    1. Class Splitter

  648. GroupGroup

    1. Group StandardIntegers

  649. fn()fn()

    1. fn() startsWith

  650. SpecSpec

    1. Spec StdAdaptorIterator

  651. SpecSpec

    1. Spec StoreIntervalsIntervalTreeNode

  652. SpecSpec

    1. Spec StorePointsOnlyIntervalTreeNode

  653. ClassClass

    1. Class StreamBuffer

  654. ConceptConcept

    1. Concept StreamConcept

  655. GroupGroup

    1. Group StreamFormats

  656. SpecSpec

    1. Spec StreamIterator

  657. ClassClass

    1. Class String

  658. ConceptConcept

    1. Concept StringConcept

  659. ClassClass

    1. Class StringEnumerator

  660. ClassClass

    1. Class StringSet

  661. fn()fn()

    1. fn() stringToStringSet

  662. ConceptConcept

    1. Concept StringTreeConcept

  663. fn()fn()

    1. fn() stronglyConnectedComponents

  664. SpecSpec

    1. Spec SuffixSegment

  665. fn()fn()

    1. fn() sum

  666. fn()fn()

    1. fn() sumOfPairsScore

  667. SpecSpec

    1. Spec SuperMaxRepeatsFastIterator

  668. SpecSpec

    1. Spec SuperMaxRepeatsIterator

  669. SpecSpec

    1. Spec SwiftFinder

  670. SpecSpec

    1. Spec SwiftLocalFinder

  671. SpecSpec

    1. Spec SwiftLocalPattern

  672. ClassClass

    1. Class SwiftParameters

  673. SpecSpec

    1. Spec SwiftPattern

  674. SpecSpec

    1. Spec SwiftSemiGlobalFinder

  675. SpecSpec

    1. Spec SwiftSemiGlobalPattern

  676. SpecSpec

    1. Spec SyncFile

  677. fn()fn()

    1. fn() sysTime

  678. ClassClass

    1. Class Tag

  679. ClassClass

    1. Class TagList

  680. ClassClass

    1. Class TagSelector

  681. fn()fn()

    1. fn() testAllOnes

  682. fn()fn()

    1. fn() testAllZeros

  683. GroupGroup

    1. Group TestSystemMacros

  684. ConceptConcept

    1. Concept TextConcept

  685. SpecSpec

    1. Spec TightDependentStringSet

  686. fn()fn()

    1. fn() toLower

  687. ClassClass

    1. Class ToolDoc

  688. GroupGroup

    1. Group TopDown

  689. SpecSpec

    1. Spec TopDownHistoryIterator

  690. SpecSpec

    1. Spec TopDownIterator

  691. fn()fn()

    1. fn() topologicalSort

  692. ClassClass

    1. Class ToStdAllocator

  693. fn()fn()

    1. fn() toUpper

  694. typedeftypedef

    1. typedef TraceBack

  695. fn()fn()

    1. fn() transitiveClosure

  696. fn()fn()

    1. fn() translate

  697. enumenum

    1. enum TranslationFrames

  698. SpecSpec

    1. Spec Tree

  699. SpecSpec

    1. Spec TrieBfamPattern

  700. ClassClass

    1. Class Triple

  701. fn()fn()

    1. fn() tripletLibraryExtension

  702. SpecSpec

    1. Spec TristateHolder

  703. ClassClass

    1. Class Tuple

  704. SpecSpec

    1. Spec Tupler

  705. fn()fn()

    1. fn() TView

  706. SpecSpec

    1. Spec TwoLevelRankDictionary

  707. SpecSpec

    1. Spec UcscFileIn

  708. SpecSpec

    1. Spec UcscFileOut

  709. ClassClass

    1. Class UcscIOContext

  710. ClassClass

    1. Class UcscRecord

  711. SpecSpec

    1. Spec UnbandedLocalAlignmentEnumerator

  712. SpecSpec

    1. Spec UndirectedGraph

  713. ClassClass

    1. Class UnexpectedEnd

  714. SpecSpec

    1. Spec UngappedShape

  715. typedeftypedef

    1. typedef UnicodeString

  716. SpecSpec

    1. Spec UniformPdf

  717. ClassClass

    1. Class UnionFind

  718. ConceptConcept

    1. Concept UnsignedIntegerConcept

  719. GroupGroup

    1. Group UpgmaConfiguratorTags

  720. fn()fn()

    1. fn() upgmaTree

  721. fn()fn()

    1. fn() upperBoundAlignedReads

  722. Fn<>Fn<>

    1. Fn<> Value

  723. fn()fn()

    1. fn() valueConstruct

  724. fn()fn()

    1. fn() valueDestruct

  725. fn()fn()

    1. fn() variance

  726. SpecSpec

    1. Spec VcfFileIn

  727. SpecSpec

    1. Spec VcfFileOut

  728. ClassClass

    1. Class VcfHeader

  729. ClassClass

    1. Class VcfHeaderRecord

  730. ClassClass

    1. Class VcfIOContext

  731. ClassClass

    1. Class VcfRecord

  732. SpecSpec

    1. Spec VectorSet

  733. Fn<>Fn<>

    1. Fn<> VertexDescriptor

  734. SpecSpec

    1. Spec VertexIterator

  735. Fn<>Fn<>

    1. Fn<> View

  736. ClassClass

    1. Class VirtualStream

  737. ClassClass

    1. Class VolatilePtr

  738. SpecSpec

    1. Spec VSTreeIterator

  739. typedeftypedef

    1. typedef Vtml200

  740. SpecSpec

    1. Spec WaveletTree

  741. GroupGroup

    1. Group WaveletTreeFibres

  742. fn()fn()

    1. fn() weaklyConnectedComponents

  743. Fn<>Fn<>

    1. Fn<> WEIGHT

  744. SpecSpec

    1. Spec WildShiftAndPattern

  745. SpecSpec

    1. Spec WordGraph

  746. GroupGroup

    1. Group WOTDIndexFibres

  747. SpecSpec

    1. Spec WuManberPattern

  748. fn()fn()

    1. fn() zscore