Typedef Pam120
PAM120 scoring matrix.

Defined in <seqan/score.h>
Signature typedef Score<int, ScoreMatrix<AminoAcid, ScoreSpecPam120> > Pam120;

Overview

A   3
B   0  4
C  -3 -6  9
D   0  4 -7  5
E   0  3 -7  3  5
F  -4 -5 -6 -7 -7  8
G   1  0 -4  0 -1 -5  5
H  -3  1 -4  0 -1 -3 -4  7
I  -1 -3 -3 -3 -3  0 -4 -4  6
J  -2 -4 -5 -4 -4  0 -5 -4  4  4
K  -2  0 -7 -1 -1 -7 -3 -2 -3 -4  5
L  -3 -4 -7 -5 -4  0 -5 -3  1  3 -4  5
M  -2 -4 -6 -4 -3 -1 -4 -4  1  2  0  3  8
N  -1  3 -5  2  1 -4  0  2 -2 -3  1 -4 -3  4
O  -1 -1 -4 -2 -1 -3 -2 -2 -1 -2 -2 -2 -2 -1 -1
P   1 -2 -4 -3 -2 -5 -2 -1 -3 -3 -2 -3 -3 -2 -2  6
Q  -1  0 -7  1  2 -6 -3  3 -3 -3  0 -2 -1  0 -1  0  6
R  -3 -2 -4 -3 -3 -5 -4  1 -2 -3  2 -4 -1 -1 -2 -1  1  6
S   1  0  0  0 -1 -3  1 -2 -2 -3 -1 -4 -2  1 -1  1 -2 -1  3
T   1  0 -3 -1 -2 -4 -1 -3  0 -2 -1 -3 -1  0 -1 -1 -2 -2  2  4
U  -1 -1 -4 -2 -1 -3 -2 -2 -1 -2 -2 -2 -2 -1 -2 -2 -1 -2 -1 -1 -2
V   0 -3 -3 -3 -3 -3 -2 -3  3  2 -4  1  1 -3 -1 -2 -3 -3 -2  0 -1  5
W  -7 -6 -8 -8 -8 -1 -8 -3 -6 -5 -5 -3 -6 -4 -5 -7 -6  1 -2 -6 -5 -8 12
Y  -4 -3 -1 -5 -5  4 -6 -1 -2 -2 -5 -2 -4 -2 -3 -6 -5 -5 -3 -3 -3 -3 -2  8
Z  -1  2 -7  3  4 -6 -2  1 -3 -3 -1 -3 -2  0 -1 -1  4 -1 -1 -2 -1 -3 -7 -5  4
X  -1 -1 -4 -2 -1 -3 -2 -2 -1 -2 -2 -2 -2 -1 -2 -2 -1 -2 -1 -1 -2 -1 -5 -3 -1 -2
*  -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8  1

    A  B  C  D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  Y  Z  X  *