Enum GeneticCode Specs
Specialization values for GeneticCode

Defined in <seqan/translation.h>
Signature enum class GeneticCodeSpec : uint8_t { ...};

Enum Values

CANONICAL = 1
The Standard Genetic Code
VERT_MITOCHONDRIAL = 2
The Vertebrate Mitochondrial Code
YEAST_MITOCHONDRIAL = 3
The Yeast Mitochondrial Code
MOLD_MITOCHONDRIAL = 4
The Mold, Protozoan, and Coelenterate Mitochondrial Code and the Mycoplasma/Spiroplasma Code
INVERT_MITOCHONDRIAL = 5
The Invertebrate Mitochondrial Code
CILIATE = 6
The CILIATE, Dasycladacean and Hexamita Nuclear Code
FLATWORM_MITOCHONDRIAL = 9
The Echinoderm and Flatworm Mitochondrial Code
EUPLOTID = 10
The EUPLOTID Nuclear Code
PROKARYOTE = 11
The Bacterial, Archaeal and Plant Plastid Code
ALT_YEAST = 12
The Alternative Yeast Nuclear Code
ASCIDIAN_MITOCHONDRIAL = 13
The Ascidian Mitochondrial Code
ALT_FLATWORM_MITOCHONDRIAL = 14
The Alternative Flatworm Mitochondrial Code
BLEPHARISMA = 15
BLEPHARISMA Nuclear Code
CHLOROPHYCEAN_MITOCHONDRIAL = 16
Chlorophycean Mitochondrial Code
TREMATODE_MITOCHONDRIAL = 21
Trematode Mitochondrial Code
SCENEDESMUS_MITOCHONDRIAL = 22
Scenedesmus obliquus mitochondrial Code
THRAUSTOCHYTRIUM_MITOCHONDRIAL = 23
Thraustochytrium Mitochondrial Code
PTEROBRANCHIA_MITOCHONDRIAL = 24
Pterobranchia mitochondrial code
GRACILIBACTERIA = 25
Candidate Division SR1 and GRACILIBACTERIA Code

Detailed Description

The numeric values of the enums correspond to the genbank transl_table values (see http://www.ncbi.nlm.nih.gov/Taxonomy/Utils/wprintgc.cgi). Some genetic codes have been deprecated, so not all numeric values are available.

Please not that this is part of the translation module which requires C++11.

See Also