Typedef Pam250
PAM250 scoring matrix.

Defined in <seqan/score.h>
Signature typedef Score<int, ScoreMatrix<AminoAcid, ScoreSpecPam250> > Pam250;

Overview

A   2
B   0  3
C  -2 -4 12
D   0  3 -5  4
E   0  3 -5  3  4
F  -3 -4 -4 -6 -5  9
G   1  0 -3  1  0 -5  5
H  -1  1 -3  1  1 -2 -2  6
I  -1 -2 -2 -2 -2  1 -3 -2  5
J  -2 -3 -4 -3 -3  2 -4 -2  4  4
K  -1  1 -5  0  0 -5 -2  0 -2 -3  5
L  -2 -3 -6 -4 -3  2 -4 -2  2  4 -3  6
M  -1 -2 -5 -3 -2  0 -3 -2  2  3  0  4  6
N   0  2 -4  2  1 -3  0  2 -2 -3  1 -3 -2  2
O   0 -1 -3 -1 -1 -2 -1 -1 -1 -1 -1 -1 -1  0 -1
P   1 -1 -3 -1 -1 -5  0  0 -2 -3 -1 -3 -2  0 -1  6
Q   0  1 -5  2  2 -5 -1  3 -2 -2  1 -2 -1  1 -1  0  4
R  -2 -1 -4 -1 -1 -4 -3  2 -2 -3  3 -3  0  0 -1  0  1  6
S   1  0  0  0  0 -3  1 -1 -1 -2  0 -3 -2  1  0  1 -1  0  2
T   1  0 -2  0  0 -3  0 -1  0 -1  0 -2 -1  0  0  0 -1 -1  1  3
U   0 -1 -3 -1 -1 -2 -1 -1 -1 -1 -1 -1 -1  0 -1 -1 -1 -1  0  0 -1
V   0 -2 -2 -2 -2 -1 -1 -2  4  3 -2  2  2 -2 -1 -1 -2 -2 -1  0 -1  4
W  -6 -5 -8 -7 -7  0 -7 -3 -5 -4 -3 -2 -4 -4 -4 -6 -5  2 -2 -5 -4 -6 17
Y  -3 -3  0 -4 -4  7 -5  0 -1 -1 -4 -1 -2 -2 -2 -5 -4 -4 -3 -3 -2 -2  0 10
Z   0  2 -5  3  3 -5  0  2 -2 -3  0 -3 -2  1 -1  0  3  0  0 -1 -1 -2 -6 -4  3
X   0 -1 -3 -1 -1 -2 -1 -1 -1 -1 -1 -1 -1  0 -1 -1 -1 -1  0  0 -1 -1 -4 -2 -1 -1
*  -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8 -8  1

    A  B  C  D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  Y  Z  X  *