Spec
ArrayGapsStores length of gap- and non-gap runs in an array.
Stores length of gap- and non-gap runs in an array.
Extends | Gaps |
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All Extended | Gaps |
All Impl'd | AssignableConcept, ContainerConcept, DestructibleConcept |
Defined in | <seqan/align.h> |
Signature |
template <typename TSequence>
class Gaps<TSequence, ArrayGaps>
|
Template Parameters
TSequence |
The type of the underling sequence. |
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Member Function Overview
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Gaps::Gaps([other]);, Gaps::Gaps(seq);
Constructor.
Member Functions Inherited From AssignableConcept
Interface Function Overview
Interface Functions Inherited From Gaps
assignSource
beginPosition
clearClipping
clearGaps
clippedBeginPosition
clippedEndPosition
clipSemiGlobal
copyClipping
copyGaps
countCharacters
countGapExtensions
countGapOpens
countGaps
countLeadingGaps
countTrailingGaps
endPosition
insertGap
insertGaps
isCharacer
isGap
iter
length
removeGap
removeGaps
setBeginPosition
setClippedBeginPosition
setClippedEndPosition
setEndPosition
source
toSourcePosition
toViewPosition
unclippedLength
Interface Functions Inherited From AssignableConcept
Interface Functions Inherited From ContainerConcept
Interface Metafunction Overview
Interface Metafunctions Inherited From ContainerConcept
Member Functions Detail
Gaps::Gaps([other]);
Gaps::Gaps(seq);
Constructor.
Parameters
other
|
Other Gaps object to copy from. |
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seq
|
Sequence concept to construct the gaps for. |
Data Races
Thread safety unknown!