fn() matchRefinementRefines (i.e. cuts into smaller parts) a set of pairwise segment matches in such a way that none of the
segments partly overlap. They are either identical (fully overlapping) or non-overlapping.
Refines (i.e. cuts into smaller parts) a set of pairwise segment matches in such a way that none of the
segments partly overlap. They are either identical (fully overlapping) or non-overlapping.
Defined in | <seqan/graph_align.h> |
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Signature |
void matchRefinement(matches, stringSet[, scoringScheme], refinedGraph);
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Parameters
matches
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The set of matches. Types: Fragment, Align, Alignment Graph |
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refinedGraph
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The resulting refined set of matches stored in a graph. Types: Alignment Graph |
stringSet
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The StringSet containing the sequences which the matches lie on. Types: StringSet |
scoringScheme
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The scoring scheme used to score the refined matches (scores are attached to edges in the refined AlignmentGraph). If no scoring scheme is given, all edges get weight 1. Types: Score |
Data Races
If not stated otherwise, concurrent invocation is not guaranteed to be thread-safe.