SeqAn3 3.4.0-rc.1
The Modern C++ library for sequence analysis.
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alignment → core Relation

File in seqan3/alignmentIncludes file in seqan3/core
alignment/exception.hppplatform.hpp
aligned_sequence / debug_stream_alignment.hppdebug_stream / tuple.hpp
configuration / align_config_band.hppconfiguration / pipeable_config_element.hpp
configuration / align_config_band.hppdetail / empty_type.hpp
configuration / align_config_band.hppdetail / strong_type.hpp
configuration / align_config_debug.hppconfiguration / detail / configuration_element_debug_mode.hpp
configuration / align_config_debug.hppconfiguration / pipeable_config_element.hpp
configuration / align_config_edit.hppconfiguration / configuration.hpp
configuration / align_config_gap_cost_affine.hppconfiguration / pipeable_config_element.hpp
configuration / align_config_gap_cost_affine.hppdetail / strong_type.hpp
configuration / align_config_method.hppconfiguration / pipeable_config_element.hpp
configuration / align_config_method.hppdetail / empty_type.hpp
configuration / align_config_method.hppdetail / strong_type.hpp
configuration / align_config_min_score.hppconfiguration / pipeable_config_element.hpp
configuration / align_config_on_result.hppconfiguration / pipeable_config_element.hpp
configuration / align_config_on_result.hppdetail / copyable_wrapper.hpp
configuration / align_config_output.hppconfiguration / pipeable_config_element.hpp
configuration / align_config_parallel.hppconfiguration / detail / configuration_element_parallel_mode.hpp
configuration / align_config_result_type.hppconfiguration / pipeable_config_element.hpp
configuration / align_config_score_type.hppconfiguration / pipeable_config_element.hpp
configuration / align_config_scoring_scheme.hppconfiguration / pipeable_config_element.hpp
configuration / align_config_vectorised.hppconfiguration / pipeable_config_element.hpp
configuration / align_config_vectorised.hppdetail / empty_type.hpp
configuration / alignment/configuration/detail.hppconfiguration / detail / core/configuration/detail/concept.hpp
matrix / detail / advanceable_alignment_coordinate.hppdebug_stream / debug_stream_type.hpp
matrix / detail / advanceable_alignment_coordinate.hppdebug_stream / tuple.hpp
matrix / detail / advanceable_alignment_coordinate.hppdetail / strong_type.hpp
matrix / detail / advanceable_alignment_coordinate.hppdetail / template_inspection.hpp
matrix / detail / affine_cell_proxy.hppdetail / empty_type.hpp
matrix / detail / aligned_sequence_builder.hppdetail / is_class_template_declarable.hpp
matrix / detail / alignment_matrix_column_major_range_base.hpprange / core/range/type_traits.hpp
matrix / detail / alignment_optimum.hppdetail / template_inspection.hpp
matrix / detail / combined_score_and_trace_matrix.hpprange / core/range/type_traits.hpp
matrix / detail / coordinate_matrix.hppdetail / template_inspection.hpp
matrix / detail / debug_matrix.hppdebug_stream / debug_stream_type.hpp
matrix / detail / debug_matrix.hppdebug_stream / optional.hpp
matrix / detail / debug_matrix.hppdebug_stream / range.hpp
matrix / detail / debug_matrix.hppdetail / template_inspection.hpp
matrix / detail / matrix_coordinate.hppdetail / strong_type.hpp
matrix / detail / trace_directions.hppadd_enum_bitwise_operators.hpp
matrix / detail / trace_directions.hppdebug_stream / debug_stream_type.hpp
matrix / detail / trace_matrix_full.hppdetail / template_inspection.hpp
matrix / detail / two_dimensional_matrix.hppdetail / deferred_crtp_base.hpp
matrix / detail / two_dimensional_matrix.hppdetail / template_inspection.hpp
matrix / detail / two_dimensional_matrix.hpprange / core/range/type_traits.hpp
matrix / detail / two_dimensional_matrix_iterator_base.hppdetail / iterator_traits.hpp
pairwise / detail / pairwise_alignment_algorithm.hppdetail / empty_type.hpp
pairwise / detail / policy_affine_gap_recursion.hppdetail / template_inspection.hpp
pairwise / detail / policy_alignment_matrix.hppconfiguration / configuration.hpp
pairwise / detail / policy_alignment_matrix.hppdetail / template_inspection.hpp
pairwise / detail / policy_alignment_result_builder.hppconfiguration / configuration.hpp
pairwise / detail / policy_alignment_result_builder.hppdetail / empty_type.hpp
pairwise / detail / policy_alignment_result_builder.hppdetail / template_inspection.hpp
pairwise / detail / policy_optimum_tracker.hppconfiguration / configuration.hpp
pairwise / detail / policy_optimum_tracker.hppdetail / template_inspection.hpp
pairwise / detail / policy_scoring_scheme.hppconfiguration / configuration.hpp
pairwise / detail / alignment/pairwise/detail/type_traits.hppconfiguration / configuration.hpp
pairwise / detail / alignment/pairwise/detail/type_traits.hppdetail / empty_type.hpp
pairwise / detail / alignment/pairwise/detail/type_traits.hppdetail / template_inspection.hpp
scoring / detail / simd_match_mismatch_scoring_scheme.hppconcept / cereal.hpp
scoring / detail / simd_matrix_scoring_scheme.hppconcept / cereal.hpp
matrix / alignment/matrix/all.hppplatform.hpp
pairwise / align_result_selector.hppconfiguration / configuration.hpp
pairwise / align_result_selector.hppdetail / template_inspection.hpp
pairwise / align_result_selector.hpprange / core/range/type_traits.hpp
pairwise / alignment_algorithm.hppdetail / deferred_crtp_base.hpp
pairwise / alignment_algorithm.hppdetail / empty_type.hpp
pairwise / alignment_configurator.hppdetail / deferred_crtp_base.hpp
pairwise / alignment_configurator.hppdetail / template_inspection.hpp
pairwise / alignment_result.hppconfiguration / configuration.hpp
pairwise / alignment_result.hppdebug_stream / debug_stream_type.hpp
pairwise / alignment_result.hppdetail / template_inspection.hpp
pairwise / edit_distance_fwd.hppdetail / deferred_crtp_base.hpp
pairwise / edit_distance_fwd.hppplatform.hpp
pairwise / edit_distance_unbanded.hppconfiguration / configuration.hpp
scoring / scoring_scheme_base.hppconcept / cereal.hpp
scoring / scoring_scheme_base.hppdetail / strong_type.hpp
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