SeqAn3 3.4.0-rc.1
The Modern C++ library for sequence analysis.
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alignment → utility Relation

File in seqan3/alignmentIncludes file in seqan3/utility
aligned_sequence / aligned_sequence_concept.hppcontainer / utility/container/concept.hpp
aligned_sequence / debug_stream_alignment.hppviews / slice.hpp
aligned_sequence / debug_stream_alignment.hpptuple / utility/tuple/concept.hpp
aligned_sequence / debug_stream_alignment.hppviews / zip.hpp
cigar_conversion / alignment_from_cigar.hppviews / slice.hpp
cigar_conversion / cigar_from_alignment.hppviews / zip.hpp
configuration / align_config_output.hpputility/concept.hpp
configuration / align_config_score_type.hpputility/concept.hpp
configuration / align_config_scoring_scheme.hpptype_traits / basic.hpp
decorator / gap_decorator.hppviews / type_reduce.hpp
detail / pairwise_alignment_concept.hpptuple / utility/tuple/concept.hpp
matrix / detail / affine_cell_proxy.hpputility/concept.hpp
matrix / detail / affine_cell_proxy.hpptuple / utility/tuple/concept.hpp
matrix / detail / aligned_sequence_builder.hpptype_traits / utility/type_traits/concept.hpp
matrix / detail / aligned_sequence_builder.hpptype_traits / lazy_conditional.hpp
matrix / detail / aligned_sequence_builder.hppviews / utility/views/convert.hpp
matrix / detail / aligned_sequence_builder.hppviews / slice.hpp
matrix / detail / aligned_sequence_builder.hppviews / type_reduce.hpp
matrix / detail / alignment_matrix_column_major_range_base.hpptype_traits / basic.hpp
matrix / detail / alignment_optimum.hpputility/concept.hpp
matrix / detail / alignment_score_matrix_one_column.hpputility/concept.hpp
matrix / detail / alignment_score_matrix_one_column_base.hpputility/concept.hpp
matrix / detail / alignment_score_matrix_one_column_base.hppcontainer / aligned_allocator.hpp
matrix / detail / alignment_score_matrix_proxy.hpputility/concept.hpp
matrix / detail / alignment_trace_matrix_base.hppcontainer / aligned_allocator.hpp
matrix / detail / alignment_trace_matrix_full.hppviews / zip.hpp
matrix / detail / alignment_trace_matrix_full_banded.hppviews / zip.hpp
matrix / detail / alignment_trace_matrix_proxy.hpptype_traits / basic.hpp
matrix / detail / combined_score_and_trace_matrix.hpputility/concept.hpp
matrix / detail / combined_score_and_trace_matrix.hppviews / zip.hpp
matrix / detail / coordinate_matrix.hppcontainer / aligned_allocator.hpp
matrix / detail / coordinate_matrix.hpptype_traits / lazy_conditional.hpp
matrix / detail / edit_distance_score_matrix_full.hppdetail / bits_of.hpp
matrix / detail / edit_distance_trace_matrix_full.hppdetail / bits_of.hpp
matrix / detail / matrix_coordinate.hpputility/concept.hpp
matrix / detail / score_matrix_single_column.hpputility/concept.hpp
matrix / detail / score_matrix_single_column.hppcontainer / aligned_allocator.hpp
matrix / detail / score_matrix_single_column.hppviews / repeat_n.hpp
matrix / detail / score_matrix_single_column.hppviews / zip.hpp
matrix / detail / trace_matrix_full.hpputility/concept.hpp
matrix / detail / trace_matrix_full.hppcontainer / aligned_allocator.hpp
matrix / detail / trace_matrix_full.hppviews / repeat_n.hpp
matrix / detail / trace_matrix_full.hppviews / zip.hpp
matrix / detail / two_dimensional_matrix_iterator_base.hpptype_traits / basic.hpp
pairwise / detail / alignment_algorithm_state.hpputility/concept.hpp
pairwise / detail / alignment/pairwise/detail/concept.hpptuple / utility/tuple/concept.hpp
pairwise / detail / pairwise_alignment_algorithm.hppcontainer / aligned_allocator.hpp
pairwise / detail / pairwise_alignment_algorithm.hppdetail / type_name_as_string.hpp
pairwise / detail / pairwise_alignment_algorithm.hppviews / elements.hpp
pairwise / detail / pairwise_alignment_algorithm_banded.hppviews / slice.hpp
pairwise / detail / policy_optimum_tracker.hpptuple / utility/tuple/concept.hpp
pairwise / detail / policy_optimum_tracker_simd.hpptype_traits / lazy_conditional.hpp
pairwise / detail / policy_optimum_tracker_simd.hppviews / zip.hpp
pairwise / detail / alignment/pairwise/detail/type_traits.hppdetail / bits_of.hpp
pairwise / detail / alignment/pairwise/detail/type_traits.hpptype_traits / function_traits.hpp
pairwise / detail / alignment/pairwise/detail/type_traits.hpptype_traits / lazy_conditional.hpp
pairwise / detail / alignment/pairwise/detail/type_traits.hppviews / chunk.hpp
pairwise / detail / alignment/pairwise/detail/type_traits.hppviews / zip.hpp
scoring / detail / simd_match_mismatch_scoring_scheme.hppdetail / bits_of.hpp
pairwise / align_result_selector.hpptype_traits / basic.hpp
pairwise / align_result_selector.hpptype_traits / detail / transformation_trait_or.hpp
pairwise / align_result_selector.hpptype_traits / lazy_conditional.hpp
pairwise / alignment_algorithm.hppcontainer / aligned_allocator.hpp
pairwise / alignment_algorithm.hpptype_traits / function_traits.hpp
pairwise / alignment_algorithm.hppviews / elements.hpp
pairwise / alignment_configurator.hpptuple / utility/tuple/concept.hpp
pairwise / alignment_configurator.hpptype_traits / lazy_conditional.hpp
pairwise / alignment_configurator.hppviews / type_reduce.hpp
pairwise / alignment_configurator.hppviews / zip.hpp
pairwise / edit_distance_fwd.hppdetail / bits_of.hpp
scoring / scoring_scheme_base.hpputility/concept.hpp
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