SeqAn3 3.3.0-rc.1
The Modern C++ library for sequence analysis.
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Provides the unidirectional seqan3::fm_index. More...
#include <algorithm>
#include <filesystem>
#include <ranges>
#include <sdsl/suffix_trees.hpp>
#include <seqan3/alphabet/views/to_rank.hpp>
#include <seqan3/core/range/type_traits.hpp>
#include <seqan3/search/fm_index/concept.hpp>
#include <seqan3/search/fm_index/detail/fm_index_cursor.hpp>
#include <seqan3/search/fm_index/fm_index_cursor.hpp>
Go to the source code of this file.
Classes | |
class | seqan3::fm_index< alphabet_t, text_layout_mode_, sdsl_index_type_ > |
The SeqAn FM Index. More... | |
Namespaces | |
namespace | seqan3 |
The main SeqAn3 namespace. | |
Typedefs | |
using | seqan3::default_sdsl_index_type = sdsl_wt_index_type |
The default FM Index Configuration. | |
using | seqan3::sdsl_wt_index_type = sdsl::csa_wt< sdsl::wt_blcd< sdsl::bit_vector, sdsl::rank_support_v<>, sdsl::select_support_scan<>, sdsl::select_support_scan< 0 > >, 16, 10 '000 '000, sdsl::sa_order_sa_sampling<>, sdsl::isa_sampling<>, sdsl::plain_byte_alphabet > |
The FM Index Configuration using a Wavelet Tree. | |
Provides the unidirectional seqan3::fm_index.