14#include <seqan3/utility/simd/concept.hpp>
16namespace seqan3::detail
30template <
typename alignment_configuration_t,
typename scoring_scheme_t>
31class policy_scoring_scheme
35 scoring_scheme_t scoring_scheme{};
40 policy_scoring_scheme() =
default;
41 policy_scoring_scheme(policy_scoring_scheme
const &) =
default;
42 policy_scoring_scheme(policy_scoring_scheme &&) =
default;
43 policy_scoring_scheme & operator=(policy_scoring_scheme
const &) =
default;
44 policy_scoring_scheme & operator=(policy_scoring_scheme &&) =
default;
45 ~policy_scoring_scheme() =
default;
50 explicit policy_scoring_scheme(alignment_configuration_t
const & config) :
51 scoring_scheme{
seqan3::
get<align_cfg::scoring_scheme>(config).scheme}
70 template <
typename alphabet_t>
71 requires simd_concept<std::remove_cvref_t<alphabet_t>>
72 auto scoring_scheme_profile_column(alphabet_t &&
alphabet)
const noexcept
74 return scoring_scheme.make_score_profile(std::forward<alphabet_t>(
alphabet));
78 template <semialphabet alphabet_t>
79 alphabet_t scoring_scheme_profile_column(alphabet_t &&
alphabet)
const noexcept
81 return std::forward<alphabet_t>(
alphabet);
Provides seqan3::align_cfg::scoring_scheme.
Provides seqan3::configuration and utility functions.
The generic alphabet concept that covers most data types used in ranges.
The main SeqAn3 namespace.
Definition aligned_sequence_concept.hpp:26
constexpr auto const & get(configuration< configs_t... > const &config) noexcept
This is an overloaded member function, provided for convenience. It differs from the above function o...
Definition configuration.hpp:412