SeqAn3 3.4.0-rc.1
The Modern C++ library for sequence analysis.
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range.hpp
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1// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin
2// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik
3// SPDX-License-Identifier: BSD-3-Clause
4
10#pragma once
11
12#include <ranges>
13
19
20namespace seqan3::detail
21{
35template <typename rng_t>
36concept debug_stream_range_guard = !
37std::same_as<std::remove_cvref_t<std::ranges::range_reference_t<rng_t>>,
39 && // prevent recursive instantiation
40 // exclude null-terminated strings:
41 !(std::is_pointer_v<std::decay_t<rng_t>>
42 && std::same_as<std::remove_cvref_t<std::ranges::range_reference_t<rng_t>>, char>);
43
55template <std::ranges::range rng_t, typename char_t>
56constexpr bool reference_type_is_streamable_v = false;
57
59template <std::ranges::range rng_t, typename char_t>
60 requires requires (std::ranges::range_reference_t<rng_t> l, debug_stream_type<char_t> s) {
61 {
62 s << l
63 };
64 }
65constexpr bool reference_type_is_streamable_v<rng_t, char_t> = true;
67} // namespace seqan3::detail
68
69namespace seqan3
70{
93template <typename char_t, std::ranges::input_range rng_t>
94inline debug_stream_type<char_t> & operator<<(debug_stream_type<char_t> & s, rng_t && r)
95 requires detail::debug_stream_range_guard<rng_t>
96{
97 static_assert(detail::reference_type_is_streamable_v<rng_t, char_t>,
98 "The reference type of the passed range cannot be streamed into the debug_stream.");
99
100 s << '[';
101 auto b = std::ranges::begin(r);
102 auto e = std::ranges::end(r);
103 if (b != e)
104 {
105 s << *b;
106 ++b;
107 }
108 while (b != e)
109 {
110 s << ',';
111 s << *b;
112 ++b;
113 }
114 s << ']';
115
116 return s;
117}
118
135template <typename char_t, sequence sequence_t>
136inline debug_stream_type<char_t> & operator<<(debug_stream_type<char_t> & s, sequence_t && sequence)
137 requires detail::debug_stream_range_guard<sequence_t>
138 && (!detail::is_uint_adaptation_v<std::remove_cvref_t<std::ranges::range_reference_t<sequence_t>>>)
139{
140 for (auto && chr : sequence)
141 s << chr;
142 return s;
143}
144
146
147} // namespace seqan3
T begin(T... args)
Provides alphabet adaptations for standard char types.
A "pretty printer" for most SeqAn data structures and related types.
Definition debug_stream_type.hpp:75
Provides various transformation traits used by the range module.
Provides seqan3::debug_stream and related types.
debug_stream_type< char_t > & operator<<(debug_stream_type< char_t > &stream, alignment_t &&alignment)
Stream operator for alignments, which are represented as tuples of aligned sequences.
Definition debug_stream_alignment.hpp:107
The generic concept for a (biological) sequence.
The main SeqAn3 namespace.
Definition aligned_sequence_concept.hpp:26
Additional non-standard concepts for ranges.
Provides alphabet adaptations for standard uint types.
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