SeqAn3 3.4.0-rc.1
The Modern C++ library for sequence analysis.
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translate.hpp File Reference

Provides seqan3::views::translate and seqan3::views::translate_single. More...

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Namespaces

namespace  seqan3
 The main SeqAn3 namespace.
 
namespace  seqan3::views
 The SeqAn namespace for views.
 

Enumerations

enum class  seqan3::translation_frames : uint8_t {
  seqan3::forward_frame0 = 1 , seqan3::forward_frame1 = 1 << 1 , seqan3::forward_frame2 = 1 << 2 , seqan3::reverse_frame0 = 1 << 3 ,
  seqan3::reverse_frame1 = 1 << 4 , seqan3::reverse_frame2 = 1 << 5 , seqan3::forward_reverse0 = forward_frame0 | reverse_frame0 , seqan3::forward_reverse1 = forward_frame1 | reverse_frame1 ,
  seqan3::forward_reverse2 = forward_frame2 | reverse_frame2 , seqan3::forward_frames = forward_frame0 | forward_frame1 | forward_frame2 , seqan3::reverse_frames = reverse_frame0 | reverse_frame1 | reverse_frame2 , seqan3::six_frames = forward_frames | reverse_frames
}
 Specialisation values for single and multiple translation frames. More...
 

Variables

constexpr auto seqan3::views::translate
 A view that translates nucleotide into aminoacid alphabet with 1, 2, 3 or 6 frames.
 
Alphabet related views
constexpr auto seqan3::views::translate_single
 A view that translates nucleotide into aminoacid alphabet for one of the six frames.
 

Detailed Description

Provides seqan3::views::translate and seqan3::views::translate_single.

Author
Sara Hetzel <sara.hetzel AT fu-berlin.de>