SeqAn3
3.0.1
The Modern C++ library for sequence analysis.
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align_config_scoring.hpp
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// -----------------------------------------------------------------------------------------------------
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// Copyright (c) 2006-2020, Knut Reinert & Freie Universität Berlin
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// Copyright (c) 2016-2020, Knut Reinert & MPI für molekulare Genetik
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// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License
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// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md
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// -----------------------------------------------------------------------------------------------------
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#pragma once
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#include <
seqan3/alignment/configuration/detail.hpp
>
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#include <
seqan3/core/type_traits/basic.hpp
>
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#include <
seqan3/alignment/scoring/scoring_scheme_concept.hpp
>
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#include <
seqan3/core/algorithm/pipeable_config_element.hpp
>
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namespace
seqan3::align_cfg
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{
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template
<
typename
scoring_scheme_t>
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struct
scoring
:
public
pipeable_config_element
<scoring<scoring_scheme_t>, scoring_scheme_t>
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{
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static
constexpr detail::align_config_id
id
{detail::align_config_id::scoring};
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};
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template
<
typename
scheme_t>
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scoring
(scheme_t) ->
scoring<remove_cvref_t<scheme_t>
>;
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}
// namespace seqan3::align_cfg
basic.hpp
Provides various type traits on generic types.
pipeable_config_element.hpp
Provides seqan3::pipeable_config_element.
seqan3::align_cfg::scoring
Sets the scoring scheme for the alignment algorithm.
Definition:
align_config_scoring.hpp:41
scoring_scheme_concept.hpp
Provides seqan3::scoring_scheme.
seqan3::align_cfg
A special sub namespace for the alignment configurations.
Definition:
align_config_aligned_ends.hpp:514
seqan3::pipeable_config_element
Adds pipe interface to configuration elements.
Definition:
pipeable_config_element.hpp:30
detail.hpp
Provides some utility functions for the alignment configurations.
seqan3
alignment
configuration
align_config_scoring.hpp
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