SeqAn3  3.0.2
The Modern C++ library for sequence analysis.
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all.hpp
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1 // -----------------------------------------------------------------------------------------------------
2 // Copyright (c) 2006-2020, Knut Reinert & Freie Universität Berlin
3 // Copyright (c) 2016-2020, Knut Reinert & MPI für molekulare Genetik
4 // This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License
5 // shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md
6 // -----------------------------------------------------------------------------------------------------
7 
13 #pragma once
14 
15 #include <seqan3/alignment/configuration/align_config_band.hpp>
16 #include <seqan3/alignment/configuration/align_config_debug.hpp>
17 #include <seqan3/alignment/configuration/align_config_edit.hpp>
18 #include <seqan3/alignment/configuration/align_config_gap_cost_affine.hpp>
19 #include <seqan3/alignment/configuration/align_config_method.hpp>
20 #include <seqan3/alignment/configuration/align_config_min_score.hpp>
21 #include <seqan3/alignment/configuration/align_config_on_result.hpp>
22 #include <seqan3/alignment/configuration/align_config_output.hpp>
23 #include <seqan3/alignment/configuration/align_config_parallel.hpp>
24 #include <seqan3/alignment/configuration/align_config_result_type.hpp>
25 #include <seqan3/alignment/configuration/align_config_score_type.hpp>
26 #include <seqan3/alignment/configuration/align_config_scoring_scheme.hpp>
27 #include <seqan3/alignment/configuration/align_config_vectorised.hpp>
28 #include <seqan3/alignment/configuration/detail.hpp>
29 
align_config_gap_cost_affine.hpp
Provides seqan3::align_config::gap_cost_affine.
align_config_vectorised.hpp
Provides seqan3::align_cfg::vectorised configuration.
align_config_method.hpp
Provides global and local alignment configurations.
align_config_result_type.hpp
Provides seqan3::align_cfg::detail::result_type.
align_config_scoring_scheme.hpp
Provides seqan3::align_cfg::scoring_scheme.
align_config_on_result.hpp
Provides seqan3::align_cfg::on_result.
align_config_band.hpp
Provides seqan3::detail::align_config_band.
align_config_output.hpp
Provides configuration for alignment output.
align_config_min_score.hpp
Provides seqan3::align_cfg::min_score configuration.
align_config_parallel.hpp
Provides seqan3::align_cfg::parallel configuration.
align_config_score_type.hpp
Provides alignment configuration seqan3::align_cfg::score_type.
align_config_edit.hpp
Provides seqan3::align_cfg::edit_scheme.
align_config_debug.hpp
Provides seqan3::align_cfg::detail::debug.
detail.hpp
Provides some utility functions for the alignment configurations.