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SeqAn3
3.0.2
The Modern C++ library for sequence analysis.
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68 constexpr
dna4() noexcept = default;
69 constexpr
dna4(
dna4 const &) noexcept = default;
71 constexpr
dna4 & operator=(
dna4 const &) noexcept = default;
72 constexpr
dna4 & operator=(
dna4 &&) noexcept = default;
73 ~
dna4() noexcept = default;
79 constexpr
dna4(t const & r) noexcept
107 ret[ rank_to_char[rnk] ] = rnk;
108 ret[
to_lower(rank_to_char[rnk])] = rnk;
112 ret[
'U'] = ret[
'T']; ret[
'u'] = ret[
't'];
115 ret[
'R'] = ret[
'A']; ret[
'r'] = ret[
'A'];
116 ret[
'Y'] = ret[
'C']; ret[
'y'] = ret[
'C'];
117 ret[
'S'] = ret[
'C']; ret[
's'] = ret[
'C'];
118 ret[
'W'] = ret[
'A']; ret[
'w'] = ret[
'A'];
119 ret[
'K'] = ret[
'G']; ret[
'k'] = ret[
'G'];
120 ret[
'M'] = ret[
'A']; ret[
'm'] = ret[
'A'];
121 ret[
'B'] = ret[
'C']; ret[
'b'] = ret[
'C'];
122 ret[
'D'] = ret[
'A']; ret[
'd'] = ret[
'A'];
123 ret[
'H'] = ret[
'A']; ret[
'h'] = ret[
'A'];
124 ret[
'V'] = ret[
'A']; ret[
'v'] = ret[
'A'];
154 constexpr
dna4 operator""_dna4(
char const c) noexcept
173 for (
size_t i = 0; i < n; ++i)
174 r[i].assign_char(s[i]);
constexpr dna4() noexcept=default
Defaulted.
static constexpr detail::min_viable_uint_t< size > alphabet_size
The size of the alphabet, i.e. the number of different values it can take.
Definition: alphabet_base.hpp:176
The four letter RNA alphabet of A,C,G,U.
Definition: rna4.hpp:47
A CRTP-base that refines seqan3::alphabet_base and is used by the nucleotides.
Definition: nucleotide_base.hpp:41
constexpr derived_type & assign_char(char_type const c) noexcept
Assign from a character, implicitly converts invalid characters.
Definition: alphabet_base.hpp:142
The four letter DNA alphabet of A,C,G,T.
Definition: dna4.hpp:51
The main SeqAn3 namespace.
Definition: aligned_sequence_concept.hpp:29
Provides seqan3::nucleotide_base.
std::conditional_t< std::same_as< char, void >, char, char > char_type
The char representation; conditional needed to make semi alphabet definitions legal.
Definition: alphabet_base.hpp:62
SeqAn specific customisations in the standard namespace.
constexpr dna4 & assign_rank(rank_type const c) noexcept
Assign from a numeric value.
Definition: alphabet_base.hpp:167
constexpr char_type to_lower(char_type const c) noexcept
Converts 'A'-'Z' to 'a'-'z' respectively; other characters are returned as is.
Definition: transform.hpp:81