Here is a list of all documented class members with links to the class documentation for each member:
- a -
- aa10li()
: seqan3::aa10li
- aa10li_vector
: seqan3::aa10li
- aa10murphy()
: seqan3::aa10murphy
- aa10murphy_vector
: seqan3::aa10murphy
- aa20()
: seqan3::aa20
- aa20_vector
: seqan3::aa20
- aa27()
: seqan3::aa27
- aa27_vector
: seqan3::aa27
- add_carriage_return
: seqan3::alignment_file_output_options
, seqan3::sequence_file_output_options
, seqan3::structure_file_output_options
- add_flag()
: seqan3::argument_parser
- add_line()
: seqan3::argument_parser
- add_list_item()
: seqan3::argument_parser
- add_option()
: seqan3::argument_parser
- add_positional_option()
: seqan3::argument_parser
- add_section()
: seqan3::argument_parser
- add_subsection()
: seqan3::argument_parser
- algorithm_range_iterator
: seqan3::algorithm_result_generator_range< algorithm_executor_type >
, seqan3::algorithm_result_generator_range< algorithm_executor_type >::algorithm_range_iterator
- algorithm_result_generator_range()
: seqan3::algorithm_result_generator_range< algorithm_executor_type >
- aligned_allocator()
: seqan3::aligned_allocator< value_t, alignment_v >
- alignment
: seqan3::aligned_allocator< value_t, alignment_v >
, seqan3::alignment_result< alignment_result_value_t >
- alignment_coordinate()
: seqan3::alignment_coordinate
- alignment_file_header()
: seqan3::alignment_file_header< ref_ids_type >
- alignment_file_input()
: seqan3::alignment_file_input< traits_type_, selected_field_ids_, valid_formats_ >
- alignment_file_output()
: seqan3::alignment_file_output< selected_field_ids_, valid_formats_, ref_ids_type >
- alignment_result()
: seqan3::alignment_result< alignment_result_value_t >
- alignment_type
: seqan3::alignment_file_input< traits_type_, selected_field_ids_, valid_formats_ >
- all()
: seqan3::dynamic_bitset< bit_capacity >
- allocate()
: seqan3::aligned_allocator< value_t, alignment_v >
- alphabet_base()
: seqan3::alphabet_base< derived_type, size, char_t >
, seqan3::alphabet_base< derived_type, 1ul, char_t >
- alphabet_size
: seqan3::alphabet_base< derived_type, size, char_t >
, seqan3::alphabet_base< derived_type, 1ul, char_t >
, seqan3::alphabet_proxy< derived_type, alphabet_type >
, seqan3::custom::alphabet< char_type >
, seqan3::custom::alphabet< uint_type >
, seqan3::wuss< SIZE >
- alphabet_tuple_base()
: seqan3::alphabet_tuple_base< derived_type, component_types >
- alphabet_type()
: fm_index_specialisation
, seqan3::bi_fm_index< alphabet_t, text_layout_mode_, sdsl_index_type_ >
, seqan3::fm_index< alphabet_t, text_layout_mode_, sdsl_index_type_ >
, seqan3::scoring_scheme_base< derived_t, alphabet_t, score_t >
- alphabet_variant()
: seqan3::alphabet_variant< alternative_types >
- aminoacid_base()
: seqan3::aminoacid_base< derived_type, size >
- aminoacid_scoring_scheme()
: seqan3::aminoacid_scoring_scheme< score_type >
- anchor_set_it
: seqan3::gap_decorator< inner_type >::gap_decorator_iterator
- any()
: seqan3::dynamic_bitset< bit_capacity >
- app_name
: seqan3::argument_parser_meta_data
- argument_count
: seqan3::function_traits< std::function< return_t(args_t...)> >
- argument_parser()
: seqan3::argument_parser
- argument_parser_error()
: seqan3::argument_parser_error
- argument_type_at
: seqan3::function_traits< std::function< return_t(args_t...)> >
- arithmetic_range_validator()
: seqan3::arithmetic_range_validator
- assign()
: seqan3::bitcompressed_vector< alphabet_type >
, seqan3::concatenated_sequences< inner_type, data_delimiters_type >
, seqan3::dynamic_bitset< bit_capacity >
, seqan3::small_string< capacity_ >
, seqan3::small_vector< value_type_, capacity_ >
- assign_char()
: seqan3::alphabet_base< derived_type, size, char_t >
, seqan3::alphabet_base< derived_type, 1ul, char_t >
, seqan3::alphabet_proxy< derived_type, alphabet_type >
, seqan3::masked< sequence_alphabet_t >
, seqan3::qualified< sequence_alphabet_t, quality_alphabet_t >
, seqan3::structured_aa< sequence_alphabet_t, structure_alphabet_t >
, seqan3::structured_rna< sequence_alphabet_t, structure_alphabet_t >
- assign_char_to()
: seqan3::custom::alphabet< char_type >
, seqan3::custom::alphabet< uint_type >
- assign_phred()
: seqan3::alphabet_proxy< derived_type, alphabet_type >
, seqan3::qualified< sequence_alphabet_t, quality_alphabet_t >
, seqan3::quality_base< derived_type, size >
- assign_rank()
: seqan3::alphabet_base< derived_type, size, char_t >
, seqan3::alphabet_base< derived_type, 1ul, char_t >
, seqan3::alphabet_proxy< derived_type, alphabet_type >
- assign_rank_to()
: seqan3::custom::alphabet< char_type >
, seqan3::custom::alphabet< uint_type >
- assign_string()
: seqan3::cigar
- assign_unaligned
: seqan3::gap_decorator< inner_type >
, writable_aligned_sequence
- at()
: seqan3::bitcompressed_vector< alphabet_type >
, seqan3::concatenated_sequences< inner_type, data_delimiters_type >
, seqan3::dynamic_bitset< bit_capacity >
, seqan3::gap_decorator< inner_type >
, seqan3::small_vector< value_type_, capacity_ >
- author
: seqan3::argument_parser_meta_data