68 constexpr dna5() noexcept = default;
69 constexpr
dna5(
dna5 const &) noexcept = default;
71 constexpr
dna5 & operator=(
dna5 const &) noexcept = default;
72 constexpr
dna5 & operator=(
dna5 &&) noexcept = default;
73 ~
dna5() noexcept = default;
85 constexpr
dna5(t const & r) noexcept
116 ret[rank_to_char_table[rnk]] = rnk;
117 ret[
to_lower(rank_to_char_table[rnk])] = rnk;
121 ret[
'U'] = ret[
'T']; ret[
'u'] = ret[
't'];
141 return rank_complement_table[rank];
147 return rank_to_char_table[rank];
154 return char_to_rank_table[
static_cast<index_t
>(chr)];
172inline namespace literals
189constexpr dna5 operator""_dna5(
char const c)
noexcept
208 for (
size_t i = 0; i < n; ++i)
209 r[i].assign_char(s[i]);
A CRTP-base that makes defining a custom alphabet easier.
Definition: alphabet_base.hpp:57
constexpr derived_type & assign_char(char_type const chr) noexcept
Assign from a character, implicitly converts invalid characters.
Definition: alphabet_base.hpp:165
detail::min_viable_uint_t< size - 1 > rank_type
The type of the alphabet when represented as a number (e.g. via to_rank()).
Definition: alphabet_base.hpp:80
static constexpr detail::min_viable_uint_t< size > alphabet_size
The size of the alphabet, i.e. the number of different values it can take.
Definition: alphabet_base.hpp:203
std::conditional_t< std::same_as< char_t, void >, char, char_t > char_type
The char representation; conditional needed to make semi alphabet definitions legal.
Definition: alphabet_base.hpp:72
constexpr derived_type & assign_rank(rank_type const c) noexcept
Assign from a numeric value.
Definition: alphabet_base.hpp:191
The five letter DNA alphabet of A,C,G,T and the unknown character N..
Definition: dna5.hpp:51
constexpr dna5() noexcept=default
Defaulted.
A CRTP-base that refines seqan3::alphabet_base and is used by the nucleotides.
Definition: nucleotide_base.hpp:43
The five letter RNA alphabet of A,C,G,U and the unknown character N..
Definition: rna5.hpp:49
The main SeqAn3 namespace.
Definition: cigar_operation_table.hpp:2
constexpr char_type to_lower(char_type const c) noexcept
Converts 'A'-'Z' to 'a'-'z' respectively; other characters are returned as is.
Definition: transform.hpp:81
SeqAn specific customisations in the standard namespace.
Provides seqan3::nucleotide_base.