SeqAn3 3.1.0
The Modern C++ library for sequence analysis.
output_options.hpp
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1// -----------------------------------------------------------------------------------------------------
2// Copyright (c) 2006-2021, Knut Reinert & Freie Universität Berlin
3// Copyright (c) 2016-2021, Knut Reinert & MPI für molekulare Genetik
4// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License
5// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md
6// -----------------------------------------------------------------------------------------------------
7
13#pragma once
14
16
17namespace seqan3
18{
19
26{
33 //TODO:
34// bool fasta_charcounts = false;
35
36
38 bool fastq_double_id = false;
39
43 bool add_carriage_return = false;
44
47};
48
49} // namespace seqan3
The main SeqAn3 namespace.
Definition: cigar_operation_table.hpp:2
Provides platform and dependency checks.
The options type defines various option members that influence the behaviour of all or some formats.
Definition: output_options.hpp:26
uint32_t fasta_letters_per_line
Inserts linebreaks after every n-th letter in the sequence; 0 means no linebreaks.
Definition: output_options.hpp:32
bool fasta_legacy_id_marker
Begin the ID line with ";" instead of ">" (not recommended).
Definition: output_options.hpp:28
bool add_carriage_return
The default plain text line-ending is "\n", but on Windows an additional carriage return is recommend...
Definition: output_options.hpp:43
bool embl_genbank_complete_header
Complete header given for embl or genbank.
Definition: output_options.hpp:46
bool fasta_blank_before_id
Insert a single space after ">" (or ";") before the actual ID.
Definition: output_options.hpp:30
bool fastq_double_id
Whether to write the ID only '@' or also after '+' line.
Definition: output_options.hpp:38