SeqAn3 3.3.0
The Modern C++ library for sequence analysis.
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search/fm_index/all.hpp
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1// -----------------------------------------------------------------------------------------------------
2// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin
3// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik
4// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License
5// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md
6// -----------------------------------------------------------------------------------------------------
7
46#pragma once
47
48#include <seqan3/search/fm_index/bi_fm_index.hpp>
49#include <seqan3/search/fm_index/bi_fm_index_cursor.hpp>
50#include <seqan3/search/fm_index/concept.hpp>
51#include <seqan3/search/fm_index/fm_index.hpp>
52#include <seqan3/search/fm_index/fm_index_cursor.hpp>
bi_fm_index.hpp
Provides the bidirectional seqan3::bi_fm_index.
bi_fm_index_cursor.hpp
Provides the seqan3::bi_fm_index_cursor for searching in the bidirectional seqan3::bi_fm_index.
fm_index.hpp
Provides the unidirectional seqan3::fm_index.
fm_index_cursor.hpp
Provides the seqan3::fm_index_cursor for searching in the unidirectional seqan3::fm_index.
concept.hpp
Provides the concept for seqan3::detail::sdsl_index.