SeqAn3 3.3.0
The Modern C++ library for sequence analysis.
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sequence_file/input_options.hpp
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1// -----------------------------------------------------------------------------------------------------
2// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin
3// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik
4// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License
5// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md
6// -----------------------------------------------------------------------------------------------------
7
13#pragma once
14
15#include <seqan3/core/platform.hpp>
16
17namespace seqan3
18{
25template <typename sequence_legal_alphabet>
26struct sequence_file_input_options
27{
29 bool truncate_ids = false;
31 bool embl_genbank_complete_header = false;
33 bool fasta_ignore_blanks_before_id = true;
34};
35
36} // namespace seqan3
seqan3
The main SeqAn3 namespace.
Definition: aligned_sequence_concept.hpp:29
platform.hpp
Provides platform and dependency checks.
seqan3::sequence_file_input_options
The options type defines various option members that influence the behaviour of all or some formats.
Definition: sequence_file/input_options.hpp:27
seqan3::sequence_file_input_options::fasta_ignore_blanks_before_id
bool fasta_ignore_blanks_before_id
Remove spaces after ">" (or ";") before the actual ID.
Definition: sequence_file/input_options.hpp:33
seqan3::sequence_file_input_options::embl_genbank_complete_header
bool embl_genbank_complete_header
Read the complete_header into the seqan3::field::id for embl or genbank format.
Definition: sequence_file/input_options.hpp:31
seqan3::sequence_file_input_options::truncate_ids
bool truncate_ids
Read the ID string only up until the first whitespace character.
Definition: sequence_file/input_options.hpp:29