| _alignment_column_t() -> decltype(std::declval< alignment_algorithm_t >().current_alignment_column()) | seqan3::detail::alignment_algorithm< config_t, algorithm_policies_t > | privatestatic |
| alignment_algorithm()=default | seqan3::detail::alignment_algorithm< config_t, algorithm_policies_t > | |
| alignment_algorithm(alignment_algorithm const &)=default | seqan3::detail::alignment_algorithm< config_t, algorithm_policies_t > | |
| alignment_algorithm(alignment_algorithm &&)=default | seqan3::detail::alignment_algorithm< config_t, algorithm_policies_t > | |
| alignment_algorithm(config_t const &cfg) | seqan3::detail::alignment_algorithm< config_t, algorithm_policies_t > | inlineexplicit |
| alignment_column | seqan3::detail::alignment_algorithm< config_t, algorithm_policies_t > | private |
| alignment_column_it | seqan3::detail::alignment_algorithm< config_t, algorithm_policies_t > | private |
| alignment_column_iterator_t typedef | seqan3::detail::alignment_algorithm< config_t, algorithm_policies_t > | private |
| alignment_column_t typedef | seqan3::detail::alignment_algorithm< config_t, algorithm_policies_t > | private |
| alignment_result_t typedef | seqan3::detail::alignment_algorithm< config_t, algorithm_policies_t > | private |
| cfg_ptr | seqan3::detail::alignment_algorithm< config_t, algorithm_policies_t > | private |
| check_valid_band_parameter(sequence1_t &&sequence1, sequence2_t &&sequence2, align_cfg::band_fixed_size const &band) | seqan3::detail::alignment_algorithm< config_t, algorithm_policies_t > | inlineprivate |
| compute_alignment_column(sequence1_value_t const &seq1_value, sequence2_t &&sequence2) | seqan3::detail::alignment_algorithm< config_t, algorithm_policies_t > | inlineprivate |
| compute_matrix(sequence1_t &sequence1, sequence2_t &sequence2) | seqan3::detail::alignment_algorithm< config_t, algorithm_policies_t > | inlineprivate |
| compute_matrix(sequence1_t &sequence1, sequence2_t &sequence2, align_cfg::band_fixed_size const &band) | seqan3::detail::alignment_algorithm< config_t, algorithm_policies_t > | inlineprivate |
| compute_single_pair(size_t const idx, sequence1_t &&sequence1, sequence2_t &&sequence2, callback_t &callback) | seqan3::detail::alignment_algorithm< config_t, algorithm_policies_t > | inlineprivate |
| convert_batch_of_sequences_to_simd_vector(sequence_range_t &sequences) | seqan3::detail::alignment_algorithm< config_t, algorithm_policies_t > | inlineprivate |
| dump_alignment_column() | seqan3::detail::alignment_algorithm< config_t, algorithm_policies_t > | inlineprivate |
| finalise_alignment() noexcept | seqan3::detail::alignment_algorithm< config_t, algorithm_policies_t > | inlineprivate |
| finalise_last_cell_in_column(bool const at_last_row) noexcept | seqan3::detail::alignment_algorithm< config_t, algorithm_policies_t > | inlineprivate |
| initialise_debug_matrices(sequence1_t &sequence1, sequence2_t &sequence2) | seqan3::detail::alignment_algorithm< config_t, algorithm_policies_t > | inlineprivate |
| initialise_first_alignment_column(sequence2_t &&sequence2) | seqan3::detail::alignment_algorithm< config_t, algorithm_policies_t > | inlineprivate |
| make_alignment_result(index_t const idx, sequence1_t &sequence1, sequence2_t &sequence2, callback_t &callback) | seqan3::detail::alignment_algorithm< config_t, algorithm_policies_t > | inlineprivate |
| make_alignment_result(indexed_sequence_pair_range_t &&index_sequence_pairs, callback_t &callback) | seqan3::detail::alignment_algorithm< config_t, algorithm_policies_t > | inlineprivate |
| max_size_in_collection | seqan3::detail::alignment_algorithm< config_t, algorithm_policies_t > | private |
| operator()(indexed_sequence_pairs_t &&indexed_sequence_pairs, callback_t &&callback) | seqan3::detail::alignment_algorithm< config_t, algorithm_policies_t > | inline |
| operator()(indexed_sequence_pairs_t &&indexed_sequence_pairs, callback_t &&callback) | seqan3::detail::alignment_algorithm< config_t, algorithm_policies_t > | inline |
| operator=(alignment_algorithm const &)=default | seqan3::detail::alignment_algorithm< config_t, algorithm_policies_t > | |
| operator=(alignment_algorithm &&)=default | seqan3::detail::alignment_algorithm< config_t, algorithm_policies_t > | |
| score_debug_matrix | seqan3::detail::alignment_algorithm< config_t, algorithm_policies_t > | private |
| score_debug_matrix_t typedef | seqan3::detail::alignment_algorithm< config_t, algorithm_policies_t > | private |
| trace_debug_matrix | seqan3::detail::alignment_algorithm< config_t, algorithm_policies_t > | private |
| trace_debug_matrix_t typedef | seqan3::detail::alignment_algorithm< config_t, algorithm_policies_t > | private |
| traits_t typedef | seqan3::detail::alignment_algorithm< config_t, algorithm_policies_t > | private |
| ~alignment_algorithm()=default | seqan3::detail::alignment_algorithm< config_t, algorithm_policies_t > | |
1.9.8