alignment_algorithm_t | seqan3::detail::alignment_matrix_policy< alignment_algorithm_t, score_matrix_t, trace_matrix_t > | private |
alignment_matrix_policy()=default | seqan3::detail::alignment_matrix_policy< alignment_algorithm_t, score_matrix_t, trace_matrix_t > | private |
alignment_matrix_policy(alignment_matrix_policy const &)=default | seqan3::detail::alignment_matrix_policy< alignment_algorithm_t, score_matrix_t, trace_matrix_t > | private |
alignment_matrix_policy(alignment_matrix_policy &&)=default | seqan3::detail::alignment_matrix_policy< alignment_algorithm_t, score_matrix_t, trace_matrix_t > | private |
alignment_matrix_policy(configuration_t const &) | seqan3::detail::alignment_matrix_policy< alignment_algorithm_t, score_matrix_t, trace_matrix_t > | inlineprivate |
allocate_matrix(sequence1_t &&sequence1, sequence2_t &&sequence2) | seqan3::detail::alignment_matrix_policy< alignment_algorithm_t, score_matrix_t, trace_matrix_t > | inlineprivate |
allocate_matrix(sequence1_t &&sequence1, sequence2_t &&sequence2, align_cfg::band_fixed_size const &band, alignment_algorithm_state< score_t > const &state) | seqan3::detail::alignment_matrix_policy< alignment_algorithm_t, score_matrix_t, trace_matrix_t > | inlineprivate |
current_alignment_column() noexcept | seqan3::detail::alignment_matrix_policy< alignment_algorithm_t, score_matrix_t, trace_matrix_t > | inlineprivate |
initialise_matrix_iterator() noexcept | seqan3::detail::alignment_matrix_policy< alignment_algorithm_t, score_matrix_t, trace_matrix_t > | inlineprivate |
next_alignment_column() noexcept | seqan3::detail::alignment_matrix_policy< alignment_algorithm_t, score_matrix_t, trace_matrix_t > | inlineprivate |
operator=(alignment_matrix_policy const &)=default | seqan3::detail::alignment_matrix_policy< alignment_algorithm_t, score_matrix_t, trace_matrix_t > | private |
operator=(alignment_matrix_policy &&)=default | seqan3::detail::alignment_matrix_policy< alignment_algorithm_t, score_matrix_t, trace_matrix_t > | private |
score_matrix | seqan3::detail::alignment_matrix_policy< alignment_algorithm_t, score_matrix_t, trace_matrix_t > | private |
score_matrix_iter | seqan3::detail::alignment_matrix_policy< alignment_algorithm_t, score_matrix_t, trace_matrix_t > | private |
seq1_slice_offset | seqan3::detail::alignment_matrix_policy< alignment_algorithm_t, score_matrix_t, trace_matrix_t > | private |
seq2_slice_offset | seqan3::detail::alignment_matrix_policy< alignment_algorithm_t, score_matrix_t, trace_matrix_t > | private |
slice_sequences(sequence1_t &sequence1, sequence2_t &sequence2, align_cfg::band_fixed_size const &band) noexcept | seqan3::detail::alignment_matrix_policy< alignment_algorithm_t, score_matrix_t, trace_matrix_t > | inlineprivate |
to_original_sequence1_position(size_t position) const noexcept | seqan3::detail::alignment_matrix_policy< alignment_algorithm_t, score_matrix_t, trace_matrix_t > | inlineprivate |
to_original_sequence2_position(size_t position) const noexcept | seqan3::detail::alignment_matrix_policy< alignment_algorithm_t, score_matrix_t, trace_matrix_t > | inlineprivate |
trace_matrix | seqan3::detail::alignment_matrix_policy< alignment_algorithm_t, score_matrix_t, trace_matrix_t > | private |
trace_matrix_iter | seqan3::detail::alignment_matrix_policy< alignment_algorithm_t, score_matrix_t, trace_matrix_t > | private |
~alignment_matrix_policy()=default | seqan3::detail::alignment_matrix_policy< alignment_algorithm_t, score_matrix_t, trace_matrix_t > | private |