A struct that contains the actual alignment result data. More...

#include <seqan3/alignment/pairwise/alignment_result.hpp>

Public Attributes
alignment_t	alignment {}
	The alignment, i.e. the actual base pair matching.

begin_positions_t	begin_positions {}
	The begin positions of the alignment.

end_positions_t	end_positions {}
	The end positions of the alignment.

score_t	score {}
	The alignment score.

score_debug_matrix_t	score_debug_matrix {}
	The score matrix. Only accessible with seqan3::align_cfg::detail::debug.

sequence1_id_t	sequence1_id {}
	The alignment identifier for the first sequence.

sequence2_id_t	sequence2_id {}
	The alignment identifier for the second sequence.

trace_debug_matrix_t	trace_debug_matrix {}
	The trace matrix. Only accessible with seqan3::align_cfg::detail::debug.

Detailed Description

template<typename sequence1_id_t, typename sequence2_id_t, typename score_t, typename end_positions_t = std::nullopt_t *, typename begin_positions_t = std::nullopt_t *, typename alignment_t = std::nullopt_t *, typename score_debug_matrix_t = std::nullopt_t *, typename trace_debug_matrix_t = std::nullopt_t *>
struct seqan3::detail::alignment_result_value_type< sequence1_id_t, sequence2_id_t, score_t, end_positions_t, begin_positions_t, alignment_t, score_debug_matrix_t, trace_debug_matrix_t >

A struct that contains the actual alignment result data.

Template Parameters

sequence1_id_t	The type of the alignment identifier for the first sequence.
sequence2_id_t	The type of the alignment identifier for the second sequence.
score_t	The type of the resulting score.
end_positions_t	The type of the end positions, can be omitted.
begin_positions_t	The type of the begin positions, can be omitted.
alignment_t	The type of the alignment, can be omitted.
score_debug_matrix_t	The type of the score matrix. Only present if seqan3::align_cfg::detail::debug is enabled.
trace_debug_matrix_t	The type of the trace matrix. Only present if seqan3::align_cfg::detail::debug is enabled.

The documentation for this struct was generated from the following file:

alignment_result.hpp

Public Attributes

Detailed Description