seqan3::detail::alignment_score_matrix_one_column_base< score_t > Struct Template Reference

A base class for alignment score matrices using only one column to compute the matrix. More...

#include <seqan3/alignment/matrix/detail/alignment_score_matrix_one_column_base.hpp>

Inheritance diagram for seqan3::detail::alignment_score_matrix_one_column_base< score_t >:

Public Attributes
std::array< underlying_type, 3 >	cache {}
	Internal cache for the last diagonal and vertical value during the alignment computation.
size_type	num_cols {}
	The number of columns.
size_type	num_rows {}
	The number of num_rows.
pool_type	pool {}
	The linearised memory pool storing only one column of the matrix.

Protected Types
using	allocator_type = aligned_allocator< element_type, sizeof(element_type)>
	The allocator type.
using	element_type = std::tuple< underlying_type, underlying_type >
	The actual element type.
using	pool_type = std::vector< element_type, allocator_type >
	The type of the underlying storage.
using	size_type = size_t
	The size type.
using	underlying_type = score_t
	The underlying type of the scores.

Detailed Description

template<typename score_t>
struct seqan3::detail::alignment_score_matrix_one_column_base< score_t >

A base class for alignment score matrices using only one column to compute the matrix.

Template Parameters

score_t

The type of the scores.

Manages the actual storage as a std::vector. How much memory is allocated is handled by the derived type. The score_t must either model the seqan3::arithmetic or seqan3::detail::simd_conceptvector concept.

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The documentation for this struct was generated from the following file:

• alignment_score_matrix_one_column_base.hpp