| begin() | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > | inline |
| cigar_type typedef | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > | |
| const_iterator typedef | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > | |
| const_reference typedef | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > | |
| difference_type typedef | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > | |
| end() noexcept | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > | inline |
| field_ids typedef | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > | |
| field_types typedef | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > | |
| flag_type typedef | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > | |
| front() noexcept | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > | inline |
| header() | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > | inline |
| header_type typedef | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > | |
| id_type typedef | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > | |
| iterator typedef | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > | |
| mapq_type typedef | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > | |
| mate_type typedef | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > | |
| operator=(sam_file_input const &)=delete | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > | |
| operator=(sam_file_input &&)=default | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > | |
| options | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > | |
| quality_type typedef | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > | |
| record_type typedef | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > | |
| ref_id_type typedef | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > | |
| ref_offset_type typedef | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > | |
| ref_sequence_type typedef | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > | |
| reference typedef | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > | |
| sam_file_input()=delete | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > | |
| sam_file_input(sam_file_input const &)=delete | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > | |
| sam_file_input(sam_file_input &&)=default | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > | |
| sam_file_input(std::filesystem::path filename, selected_field_ids const &fields_tag=selected_field_ids{}) | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > | inline |
| sam_file_input(stream_t &stream, file_format const &format_tag, selected_field_ids const &fields_tag=selected_field_ids{}) | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > | inline |
| sam_file_input(stream_t &&stream, file_format const &format_tag, selected_field_ids const &fields_tag=selected_field_ids{}) | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > | inline |
| sam_file_input(std::filesystem::path filename, typename traits_type::ref_ids &ref_ids, typename traits_type::ref_sequences &ref_sequences, selected_field_ids const &fields_tag=selected_field_ids{}) | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > | inline |
| sam_file_input(stream_t &stream, typename traits_type::ref_ids &ref_ids, typename traits_type::ref_sequences &ref_sequences, file_format const &format_tag, selected_field_ids const &fields_tag=selected_field_ids{}) | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > | inline |
| sam_file_input(stream_t &&stream, typename traits_type::ref_ids &ref_ids, typename traits_type::ref_sequences &ref_sequences, file_format const &format_tag, selected_field_ids const &fields_tag=selected_field_ids{}) | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > | inline |
| sam_file_input(stream_type &&stream, file_format const &, selected_field_ids const &) -> sam_file_input< typename sam_file_input<>::traits_type, selected_field_ids, type_list< file_format > > | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > | related |
| sam_file_input(stream_type &stream, file_format const &, selected_field_ids const &) -> sam_file_input< typename sam_file_input<>::traits_type, selected_field_ids, type_list< file_format > > | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > | related |
| sam_file_input(stream_type &&stream, file_format const &) -> sam_file_input< typename sam_file_input<>::traits_type, typename sam_file_input<>::selected_field_ids, type_list< file_format > > | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > | related |
| sam_file_input(stream_type &stream, file_format const &) -> sam_file_input< typename sam_file_input<>::traits_type, typename sam_file_input<>::selected_field_ids, type_list< file_format > > | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > | related |
| sam_file_input(std::filesystem::path path, ref_ids_t &, ref_sequences_t &, selected_field_ids const &) -> sam_file_input< sam_file_input_default_traits< std::remove_reference_t< ref_sequences_t >, std::remove_reference_t< ref_ids_t > >, selected_field_ids, typename sam_file_input<>::valid_formats > | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > | related |
| sam_file_input(std::filesystem::path path, ref_ids_t &, ref_sequences_t &) -> sam_file_input< sam_file_input_default_traits< std::remove_reference_t< ref_sequences_t >, std::remove_reference_t< ref_ids_t > >, typename sam_file_input<>::selected_field_ids, typename sam_file_input<>::valid_formats > | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > | related |
| sam_file_input(stream_type &&stream, ref_ids_t &, ref_sequences_t &, file_format const &, selected_field_ids const &) -> sam_file_input< sam_file_input_default_traits< std::remove_reference_t< ref_sequences_t >, std::remove_reference_t< ref_ids_t > >, selected_field_ids, type_list< file_format > > | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > | related |
| sam_file_input(stream_type &stream, ref_ids_t &, ref_sequences_t &, file_format const &, selected_field_ids const &) -> sam_file_input< sam_file_input_default_traits< std::remove_reference_t< ref_sequences_t >, std::remove_reference_t< ref_ids_t > >, selected_field_ids, type_list< file_format > > | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > | related |
| sam_file_input(stream_type &&stream, ref_ids_t &, ref_sequences_t &, file_format const &) -> sam_file_input< sam_file_input_default_traits< std::remove_reference_t< ref_sequences_t >, std::remove_reference_t< ref_ids_t > >, typename sam_file_input<>::selected_field_ids, type_list< file_format > > | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > | related |
| sam_file_input(stream_type &stream, ref_ids_t &, ref_sequences_t &, file_format const &) -> sam_file_input< sam_file_input_default_traits< std::remove_reference_t< ref_sequences_t >, std::remove_reference_t< ref_ids_t > >, typename sam_file_input<>::selected_field_ids, type_list< file_format > > | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > | related |
| selected_field_ids typedef | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > | |
| sentinel typedef | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > | |
| sequence_type typedef | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > | |
| size_type typedef | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > | |
| stream_char_type typedef | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > | |
| traits_type typedef | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > | |
| valid_formats typedef | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > | |
| value_type typedef | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > | |
| ~sam_file_input()=default | seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > | |