Computes the best local alignment of two sequences.
localAlignment(graph, score, tag)
localAlignment(file, strSet, score, tag)
Alignment object to use.
Alignments with scores < cutoff will be discarded.
The lowest diagonal of the alignment matrix that will be computed for banded alignment.
The highest diagonal of the alignment matrix that will be computed for banded alignment.
A tag indicating the alignment algorithm to use
A string set with 2 sequences.
Remarks: If an alignment graph is used that graph must contain a string set with two sequences
The alignment graph having 2 sequences.
Types: Alignment Graph
A file stream or std::cout to write a textual alignment
The score values to be used for computing the alignment.
The maximum score of the best local alignment.
SeqAn - Sequence Analysis Library - www.seqan.de