Returns the score for aligning the entries
entryH and entryV.
A scoring scheme.
The scoring scheme to use.
Aligned character in the first sequence.
Aligned character in the second sequence.
Entry in sequence one.
Entry in sequence two.
The version that explicitely requires two characters is deprecated. For using (or defining) custom scoring schemes better use the functions score, scoreGapOpenVertical, scoreGapExtendVertical, scoreGapOpenHorizontal and scoreGapExtendHorizontal as they require character positions and sequences and allow for position-dependent scoring schemes.
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