format_sam_base.hpp File Reference

Provides the seqan3::format_sam_base that can be inherited from. More...

#include <climits>
#include <ranges>
#include <string>
#include <vector>
#include <seqan3/alphabet/views/char_to.hpp>
#include <seqan3/core/debug_stream/range.hpp>
#include <seqan3/core/range/detail/misc.hpp>
#include <seqan3/io/detail/misc.hpp>
#include <seqan3/io/sam_file/detail/cigar.hpp>
#include <seqan3/io/sam_file/header.hpp>
#include <seqan3/io/sam_file/input_options.hpp>
#include <seqan3/io/sam_file/output_format_concept.hpp>
#include <seqan3/utility/detail/type_name_as_string.hpp>
#include <seqan3/utility/views/repeat_n.hpp>
#include <seqan3/utility/views/slice.hpp>
#include <seqan3/utility/views/zip.hpp>

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Classes
class	seqan3::detail::format_sam_base
	The alignment base format. More...

Namespaces
namespace	seqan3
	The main SeqAn3 namespace.
namespace	seqan3::detail
	The internal SeqAn3 namespace.

Detailed Description

Provides the seqan3::format_sam_base that can be inherited from.

Author

Svenja Mehringer <svenja.mehringer AT fu-berlin.de>

Lydia Buntrock <lydia.buntrock AT fu-berlin.de>