SeqAn3 3.4.0-rc.1
The Modern C++ library for sequence analysis.
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Provides seqan3::sam_file_input_format and auxiliary classes. More...
#include <fstream>
#include <optional>
#include <string>
#include <vector>
#include <seqan3/alphabet/cigar/cigar.hpp>
#include <seqan3/alphabet/gap/gapped.hpp>
#include <seqan3/alphabet/nucleotide/dna4.hpp>
#include <seqan3/alphabet/nucleotide/dna5.hpp>
#include <seqan3/alphabet/quality/aliases.hpp>
#include <seqan3/alphabet/quality/phred42.hpp>
#include <seqan3/io/sam_file/header.hpp>
#include <seqan3/io/sam_file/input_options.hpp>
#include <seqan3/io/sam_file/sam_flag.hpp>
#include <seqan3/io/sam_file/sam_tag_dictionary.hpp>
#include <seqan3/utility/type_list/type_list.hpp>
Go to the source code of this file.
Classes | |
interface | seqan3::sam_file_input_format< t > |
The generic concept for alignment file input formats. More... | |
struct | seqan3::detail::sam_file_input_format_exposer< format_type > |
Internal class used to expose the actual format interface to read SAM records from the file. More... | |
Namespaces | |
namespace | seqan3 |
The main SeqAn3 namespace. | |
namespace | seqan3::detail |
The internal SeqAn3 namespace. | |
Concepts | |
concept | seqan3::detail::type_list_of_sam_file_input_formats |
Auxiliary concept that checks whether a type is a seqan3::type_list and all types meet seqan3::sam_file_input_format. | |
Variables | |
template<typename t > | |
constexpr bool | seqan3::detail::is_type_list_of_sam_file_input_formats_v = false |
Auxiliary value metafuncton that checks whether a type is a seqan3::type_list and all types meet seqan3::sam_file_input_format [default is false]. | |
template<typename... ts> | |
constexpr bool | seqan3::detail::is_type_list_of_sam_file_input_formats_v< type_list< ts... > > = (sam_file_input_format<ts> && ...) |
Auxiliary value metafuncton that checks whether a type is a seqan3::type_list and all types meet seqan3::sam_file_input_format [overload]. | |
Provides seqan3::sam_file_input_format and auxiliary classes.