simd_affine_gap_policy.hpp File Reference

Provides seqan3::detail::simd_affine_gap_policy. More...

#include <limits>
#include <tuple>
#include <seqan3/alignment/configuration/align_config_gap_cost_affine.hpp>
#include <seqan3/alignment/matrix/detail/alignment_optimum.hpp>
#include <seqan3/alignment/matrix/detail/trace_directions.hpp>
#include <seqan3/alignment/pairwise/detail/alignment_algorithm_state.hpp>
#include <seqan3/core/configuration/configuration.hpp>
#include <seqan3/utility/concept.hpp>
#include <seqan3/utility/simd/algorithm.hpp>
#include <seqan3/utility/simd/concept.hpp>
#include <seqan3/utility/simd/simd_traits.hpp>

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Classes
class	seqan3::detail::simd_affine_gap_policy< alignment_algorithm_t, score_t, align_local_t >
	The CRTP-policy that computes a batch of cells in the alignment matrix using simd instructions. More...

Namespaces
namespace	seqan3
	The main SeqAn3 namespace.
namespace	seqan3::detail
	The internal SeqAn3 namespace.

Detailed Description

Provides seqan3::detail::simd_affine_gap_policy.

Author

Rene Rahn <rene.rahn AT fu-berlin.de>