seqan3::format_bam::alignment_record_core Struct Reference

Stores all fixed length variables which can be read/written directly by reinterpreting the binary stream. More...

Public Attributes
uint32_t	bin: 16
	The bin number.
int32_t	block_size
	The size in bytes of the whole BAM record.
sam_flag	flag
	The flag value (uint16_t enum).
uint32_t	l_read_name: 8
	The length of the read name including the \0 character.
int32_t	l_seq
	The number of bases of the read sequence.
uint32_t	mapq: 8
	The mapping quality.
uint32_t	n_cigar_op: 16
	The number of cigar operations of the alignment.
int32_t	next_pos
	The begin position of the mate alignment.
int32_t	next_refID
	The reference id of the mate.
int32_t	pos
	The begin position of the alignment.
int32_t	refID
	The reference id the read was mapped to.
int32_t	tlen
	The template length of the read and its mate.

Detailed Description

Stores all fixed length variables which can be read/written directly by reinterpreting the binary stream.

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The documentation for this struct was generated from the following file:

• format_bam.hpp