format_fasta.hpp File Reference

Provides the seqan3::format_fasta tag and the seqan3::sequence_file_input_format and seqan3::sequence_file_output_format specialisation for this tag. More...

#include <iterator>
#include <string>
#include <string_view>
#include <vector>
#include <seqan3/alphabet/nucleotide/dna5.hpp>
#include <seqan3/alphabet/quality/aliases.hpp>
#include <seqan3/core/char_operations/predicate.hpp>
#include <seqan3/core/type_traits/range.hpp>
#include <seqan3/io/detail/ignore_output_iterator.hpp>
#include <seqan3/io/detail/misc.hpp>
#include <seqan3/io/sequence_file/input_format_concept.hpp>
#include <seqan3/io/sequence_file/input_options.hpp>
#include <seqan3/io/sequence_file/output_format_concept.hpp>
#include <seqan3/io/sequence_file/output_options.hpp>
#include <seqan3/io/stream/iterator.hpp>
#include <seqan3/range/shortcuts.hpp>
#include <seqan3/range/detail/misc.hpp>
#include <seqan3/range/view/char_to.hpp>
#include <seqan3/range/view/istreambuf.hpp>
#include <seqan3/range/view/to_char.hpp>
#include <seqan3/range/view/take.hpp>
#include <seqan3/range/view/take_exactly.hpp>
#include <seqan3/range/view/take_line.hpp>
#include <seqan3/range/view/take_until.hpp>
#include <seqan3/std/algorithm>
#include <seqan3/std/ranges>

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Classes
struct	seqan3::format_fasta
	The FastA format (tag). More...

Namespaces
	seqan3
	The main SeqAn3 namespace.

Detailed Description

Provides the seqan3::format_fasta tag and the seqan3::sequence_file_input_format and seqan3::sequence_file_output_format specialisation for this tag.

Author

Hannes Hauswedell <hannes.hauswedell AT fu-berlin.de>