SeqAn3  3.0.1
The Modern C++ library for sequence analysis.
align_config_scoring.hpp
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1 // -----------------------------------------------------------------------------------------------------
2 // Copyright (c) 2006-2020, Knut Reinert & Freie Universität Berlin
3 // Copyright (c) 2016-2020, Knut Reinert & MPI für molekulare Genetik
4 // This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License
5 // shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md
6 // -----------------------------------------------------------------------------------------------------
7 
14 #pragma once
15 
20 
21 namespace seqan3::align_cfg
22 {
23 
40 template <typename scoring_scheme_t>
41 struct scoring : public pipeable_config_element<scoring<scoring_scheme_t>, scoring_scheme_t>
42 {
45  static constexpr detail::align_config_id id{detail::align_config_id::scoring};
46 };
47 
53 template <typename scheme_t>
57 
58 } // namespace seqan3::align_cfg
basic.hpp
Provides various type traits on generic types.
pipeable_config_element.hpp
Provides seqan3::pipeable_config_element.
seqan3::align_cfg::scoring
Sets the scoring scheme for the alignment algorithm.
Definition: align_config_scoring.hpp:41
scoring_scheme_concept.hpp
Provides seqan3::scoring_scheme.
seqan3::align_cfg
A special sub namespace for the alignment configurations.
Definition: align_config_aligned_ends.hpp:514
seqan3::pipeable_config_element
Adds pipe interface to configuration elements.
Definition: pipeable_config_element.hpp:30
detail.hpp
Provides some utility functions for the alignment configurations.