Provides the mode configuration to define the search modes "all", "all_best", "best" and "strata". More...
#include <seqan3/core/algorithm/configuration.hpp>
#include <seqan3/core/algorithm/pipeable_config_element.hpp>
#include <seqan3/core/detail/strong_type.hpp>
#include <seqan3/core/type_traits/basic.hpp>
#include <seqan3/search/configuration/detail.hpp>
Go to the source code of this file.
Classes | |
struct | seqan3::search_cfg::mode< mode_t > |
Configuration element to determine the search mode. More... | |
struct | seqan3::search_cfg::strata |
Configuration element to receive all hits with the best number of errors plus the strata value. A strong type of underlying type uint8_t that represents the number or errors for strata. All hits are found with the fewest numbererrors plus 'value'. More... | |
Namespaces | |
seqan3 | |
The main SeqAn3 namespace. | |
seqan3::search_cfg | |
A special sub namespace for the search configurations. | |
Variables | |
constexpr detail::search_mode_all | seqan3::search_cfg::all |
Configuration element to receive all hits within the error bounds. | |
constexpr detail::search_mode_all_best | seqan3::search_cfg::all_best |
Configuration element to receive all hits within the lowest number of errors. | |
constexpr detail::search_mode_best | seqan3::search_cfg::best |
Configuration element to receive one best hit (with the lowest number of errors). | |
Provides the mode configuration to define the search modes "all", "all_best", "best" and "strata".