SeqAn3  3.0.1
The Modern C++ library for sequence analysis.
all.hpp
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1 // -----------------------------------------------------------------------------------------------------
2 // Copyright (c) 2006-2020, Knut Reinert & Freie Universität Berlin
3 // Copyright (c) 2016-2020, Knut Reinert & MPI für molekulare Genetik
4 // This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License
5 // shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md
6 // -----------------------------------------------------------------------------------------------------
7 
13 #pragma once
14 
15 #include <seqan3/core/algorithm/configuration.hpp>
16 #include <seqan3/search/configuration/default_configuration.hpp>
17 #include <seqan3/search/configuration/detail.hpp>
18 #include <seqan3/search/configuration/max_error.hpp>
19 #include <seqan3/search/configuration/max_error_rate.hpp>
20 #include <seqan3/search/configuration/mode.hpp>
21 #include <seqan3/search/configuration/output.hpp>
22 #include <seqan3/search/configuration/parallel.hpp>
23 
parallel.hpp
Provides seqan3::search_cfg::parallel configuration.
mode.hpp
Provides the mode configuration to define the search modes "all", "all_best", "best" and "strata".
configuration.hpp
Provides seqan3::detail::configuration and utility functions.
detail.hpp
Provides compatibility matrix for search configurations.
max_error.hpp
Provides the configuration for maximum number of errors for all error types.
max_error_rate.hpp
Provides the configuration for maximum number of errors in percent of the query length across all err...
default_configuration.hpp
Provides the default configuration for the seqan3::search() interface.
output.hpp
Provides the configuration for returning positions in the text.