alignment → core Relation

File in seqan3/alignment	Includes file in seqan3/core
aligned_sequence / debug_stream_alignment.hpp	detail / debug_stream_tuple.hpp
aligned_sequence / debug_stream_alignment.hpp	concept / tuple.hpp
exception.hpp	platform.hpp
band / static_band.hpp	algorithm / bound.hpp
configuration / align_config_band.hpp	algorithm / pipeable_config_element.hpp
configuration / align_config_band.hpp	detail / empty_type.hpp
configuration / align_config_band.hpp	detail / strong_type.hpp
configuration / align_config_debug.hpp	algorithm / configuration_element_debug_mode.hpp
configuration / align_config_debug.hpp	algorithm / pipeable_config_element.hpp
configuration / align_config_edit.hpp	algorithm / configuration.hpp
configuration / align_config_gap_cost_affine.hpp	algorithm / pipeable_config_element.hpp
configuration / align_config_gap_cost_affine.hpp	detail / strong_type.hpp
configuration / align_config_method.hpp	algorithm / pipeable_config_element.hpp
configuration / align_config_method.hpp	detail / empty_type.hpp
configuration / align_config_method.hpp	detail / strong_type.hpp
configuration / align_config_min_score.hpp	algorithm / pipeable_config_element.hpp
configuration / align_config_on_result.hpp	algorithm / pipeable_config_element.hpp
configuration / align_config_on_result.hpp	semiregular_box.hpp
configuration / align_config_output.hpp	algorithm / pipeable_config_element.hpp
configuration / align_config_output.hpp	concept / core_language.hpp
configuration / align_config_parallel.hpp	algorithm / configuration_element_parallel_mode.hpp
configuration / align_config_result_type.hpp	algorithm / pipeable_config_element.hpp
configuration / align_config_score_type.hpp	algorithm / pipeable_config_element.hpp
configuration / align_config_score_type.hpp	concept / core_language.hpp
configuration / align_config_scoring_scheme.hpp	type_traits / basic.hpp
configuration / align_config_scoring_scheme.hpp	algorithm / pipeable_config_element.hpp
configuration / align_config_vectorised.hpp	algorithm / pipeable_config_element.hpp
configuration / align_config_vectorised.hpp	detail / empty_type.hpp
configuration / detail.hpp	algorithm / configuration_utility.hpp
matrix / detail / affine_cell_proxy.hpp	concept / core_language.hpp
matrix / detail / affine_cell_proxy.hpp	simd / concept.hpp
matrix / detail / affine_cell_proxy.hpp	tuple_utility.hpp
matrix / detail / aligned_sequence_builder.hpp	type_traits / concept.hpp
matrix / detail / aligned_sequence_builder.hpp	type_traits / lazy.hpp
matrix / detail / alignment_matrix_column_major_range_base.hpp	type_traits / basic.hpp
matrix / detail / alignment_matrix_column_major_range_base.hpp	type_traits / range.hpp
matrix / detail / alignment_score_matrix_one_column.hpp	concept / core_language.hpp
matrix / detail / alignment_score_matrix_one_column.hpp	simd / concept.hpp
matrix / detail / alignment_score_matrix_one_column_base.hpp	concept / core_language.hpp
matrix / detail / alignment_score_matrix_one_column_base.hpp	simd / concept.hpp
matrix / detail / alignment_score_matrix_proxy.hpp	concept / core_language.hpp
matrix / detail / alignment_score_matrix_proxy.hpp	simd / concept.hpp
matrix / detail / alignment_trace_matrix_base.hpp	simd / concept.hpp
matrix / detail / alignment_trace_matrix_proxy.hpp	simd / concept.hpp
matrix / detail / alignment_trace_matrix_proxy.hpp	type_traits / basic.hpp
matrix / detail / coordinate_matrix.hpp	simd / concept.hpp
matrix / detail / coordinate_matrix.hpp	simd / simd_algorithm.hpp
matrix / detail / coordinate_matrix.hpp	simd / simd_traits.hpp
matrix / detail / coordinate_matrix.hpp	simd / view_iota_simd.hpp
matrix / detail / coordinate_matrix.hpp	type_traits / lazy.hpp
matrix / detail / coordinate_matrix.hpp	type_traits / template_inspection.hpp
matrix / detail / matrix_coordinate.hpp	concept / core_language.hpp
matrix / detail / matrix_coordinate.hpp	detail / strong_type.hpp
matrix / detail / matrix_coordinate.hpp	simd / concept.hpp
matrix / detail / matrix_coordinate.hpp	simd / simd_algorithm.hpp
matrix / detail / score_matrix_single_column.hpp	concept / core_language.hpp
matrix / detail / score_matrix_single_column.hpp	simd / concept.hpp
matrix / detail / trace_matrix_full.hpp	concept / core_language.hpp
matrix / detail / trace_matrix_full.hpp	type_traits / template_inspection.hpp
matrix / detail / two_dimensional_matrix.hpp	type_traits / deferred_crtp_base.hpp
matrix / detail / two_dimensional_matrix.hpp	type_traits / template_inspection.hpp
matrix / detail / two_dimensional_matrix_iterator_base.hpp	type_traits / basic.hpp
matrix / detail / two_dimensional_matrix_iterator_base.hpp	type_traits / iterator.hpp
pairwise / detail / alignment_algorithm_state.hpp	concept / core_language.hpp
pairwise / detail / alignment_algorithm_state.hpp	simd / concept.hpp
pairwise / detail / concept.hpp	concept / tuple.hpp
pairwise / detail / pairwise_alignment_algorithm.hpp	detail / empty_type.hpp
pairwise / detail / pairwise_alignment_algorithm.hpp	detail / type_inspection.hpp
pairwise / detail / pairwise_alignment_algorithm.hpp	simd / view_to_simd.hpp
pairwise / detail / policy_affine_gap_recursion.hpp	type_traits / template_inspection.hpp
pairwise / detail / policy_affine_gap_recursion.hpp	simd / concept.hpp
pairwise / detail / policy_affine_gap_recursion.hpp	simd / simd_algorithm.hpp
pairwise / detail / policy_affine_gap_recursion_banded.hpp	type_traits / template_inspection.hpp
pairwise / detail / policy_alignment_matrix.hpp	algorithm / configuration.hpp
pairwise / detail / policy_alignment_matrix.hpp	type_traits / template_inspection.hpp
pairwise / detail / policy_alignment_result_builder.hpp	algorithm / configuration.hpp
pairwise / detail / policy_alignment_result_builder.hpp	detail / empty_type.hpp
pairwise / detail / policy_alignment_result_builder.hpp	type_traits / template_inspection.hpp
pairwise / detail / policy_optimum_tracker.hpp	algorithm / configuration.hpp
pairwise / detail / policy_optimum_tracker.hpp	concept / tuple.hpp
pairwise / detail / policy_optimum_tracker.hpp	type_traits / template_inspection.hpp
pairwise / detail / policy_optimum_tracker_simd.hpp	simd / simd.hpp
pairwise / detail / policy_optimum_tracker_simd.hpp	simd / simd_algorithm.hpp
pairwise / detail / policy_optimum_tracker_simd.hpp	simd / simd_traits.hpp
pairwise / detail / policy_optimum_tracker_simd.hpp	type_traits / lazy.hpp
pairwise / detail / type_traits.hpp	algorithm / configuration.hpp
pairwise / detail / type_traits.hpp	bit_manipulation.hpp
pairwise / detail / type_traits.hpp	detail / empty_type.hpp
pairwise / detail / type_traits.hpp	simd / simd_traits.hpp
pairwise / detail / type_traits.hpp	simd / simd.hpp
pairwise / detail / type_traits.hpp	type_traits / function.hpp
pairwise / detail / type_traits.hpp	type_traits / lazy.hpp
pairwise / detail / type_traits.hpp	type_traits / template_inspection.hpp
scoring / detail / simd_match_mismatch_scoring_scheme.hpp	concept / cereal.hpp
scoring / detail / simd_match_mismatch_scoring_scheme.hpp	simd / concept.hpp
scoring / detail / simd_match_mismatch_scoring_scheme.hpp	simd / simd_algorithm.hpp
scoring / detail / simd_matrix_scoring_scheme.hpp	concept / cereal.hpp
scoring / detail / simd_matrix_scoring_scheme.hpp	simd / concept.hpp
scoring / detail / simd_matrix_scoring_scheme.hpp	simd / simd_algorithm.hpp
matrix / alignment_coordinate.hpp	detail / debug_stream_tuple.hpp
matrix / alignment_coordinate.hpp	detail / debug_stream_type.hpp
matrix / alignment_coordinate.hpp	detail / strong_type.hpp
matrix / alignment_coordinate.hpp	type_traits / template_inspection.hpp
matrix / alignment_optimum.hpp	concept / core_language.hpp
matrix / alignment_optimum.hpp	type_traits / template_inspection.hpp
matrix / alignment_optimum.hpp	simd / concept.hpp
matrix / alignment_optimum.hpp	simd / simd_algorithm.hpp
matrix / alignment_optimum.hpp	simd / simd_traits.hpp
matrix / alignment_trace_algorithms.hpp	type_traits / range.hpp
matrix / debug_matrix.hpp	detail / debug_stream_alphabet.hpp
matrix / debug_matrix.hpp	detail / debug_stream_range.hpp
matrix / debug_matrix.hpp	detail / debug_stream_type.hpp
matrix / debug_matrix.hpp	detail / debug_stream_optional.hpp
matrix / debug_matrix.hpp	type_traits / template_inspection.hpp
matrix / edit_distance_score_matrix_full.hpp	bit_manipulation.hpp
matrix / edit_distance_trace_matrix_full.hpp	bit_manipulation.hpp
matrix / trace_directions.hpp	add_enum_bitwise_operators.hpp
matrix / trace_directions.hpp	detail / debug_stream_type.hpp
pairwise / align_result_selector.hpp	algorithm / configuration.hpp
pairwise / align_result_selector.hpp	type_traits / basic.hpp
pairwise / align_result_selector.hpp	type_traits / lazy.hpp
pairwise / align_result_selector.hpp	type_traits / range.hpp
pairwise / align_result_selector.hpp	type_traits / template_inspection.hpp
pairwise / align_result_selector.hpp	type_traits / transformation_trait_or.hpp
pairwise / align_result_selector.hpp	type_list / traits.hpp
pairwise / align_result_selector.hpp	type_list / type_list.hpp
pairwise / alignment_algorithm.hpp	detail / empty_type.hpp
pairwise / alignment_algorithm.hpp	simd / concept.hpp
pairwise / alignment_algorithm.hpp	simd / simd.hpp
pairwise / alignment_algorithm.hpp	simd / simd_traits.hpp
pairwise / alignment_algorithm.hpp	simd / view_to_simd.hpp
pairwise / alignment_algorithm.hpp	type_traits / deferred_crtp_base.hpp
pairwise / alignment_algorithm.hpp	type_traits / function.hpp
pairwise / alignment_configurator.hpp	concept / tuple.hpp
pairwise / alignment_configurator.hpp	simd / simd.hpp
pairwise / alignment_configurator.hpp	type_traits / deferred_crtp_base.hpp
pairwise / alignment_configurator.hpp	type_traits / lazy.hpp
pairwise / alignment_configurator.hpp	type_traits / template_inspection.hpp
pairwise / alignment_configurator.hpp	type_list / type_list.hpp
pairwise / alignment_result.hpp	algorithm / configuration.hpp
pairwise / alignment_result.hpp	detail / debug_stream_type.hpp
pairwise / alignment_result.hpp	type_traits / template_inspection.hpp
pairwise / edit_distance_fwd.hpp	bit_manipulation.hpp
pairwise / edit_distance_fwd.hpp	platform.hpp
pairwise / edit_distance_fwd.hpp	type_traits / deferred_crtp_base.hpp
pairwise / edit_distance_unbanded.hpp	algorithm / configuration.hpp
pairwise / policy / affine_gap_policy.hpp	concept / core_language.hpp
pairwise / policy / alignment_matrix_policy.hpp	type_traits / basic.hpp
pairwise / policy / scoring_scheme_policy.hpp	platform.hpp
pairwise / policy / simd_affine_gap_policy.hpp	algorithm / configuration.hpp
pairwise / policy / simd_affine_gap_policy.hpp	concept / core_language.hpp
pairwise / policy / simd_affine_gap_policy.hpp	simd / concept.hpp
pairwise / policy / simd_affine_gap_policy.hpp	simd / simd_algorithm.hpp
pairwise / policy / simd_affine_gap_policy.hpp	simd / simd_traits.hpp
pairwise / policy / simd_find_optimum_policy.hpp	detail / empty_type.hpp
pairwise / policy / simd_find_optimum_policy.hpp	simd / concept.hpp
scoring / gap_scheme.hpp	concept / cereal.hpp
scoring / gap_scheme.hpp	concept / core_language.hpp
scoring / gap_scheme.hpp	detail / strong_type.hpp
scoring / scoring_scheme_base.hpp	concept / cereal.hpp
scoring / scoring_scheme_base.hpp	concept / core_language.hpp
scoring / scoring_scheme_base.hpp	detail / strong_type.hpp