A traits type that specifies input as amino acids. More...
#include <seqan3/io/sequence_file/input.hpp>
Public Types | |
Member types | |
Definitions to satisfy seqan3::SequenceFileInputTraits. | |
using | sequence_alphabet = aa27 |
The sequence alphabet is seqan3::aa27. | |
using | sequence_legal_alphabet = aa27 |
The legal sequence alphabet for parsing is seqan3::aa27. | |
Member types | |
Definitions to satisfy seqan3::SequenceFileInputTraits. | |
template<typename _sequence_alphabet > | |
using | sequence_container = std::vector< _sequence_alphabet > |
The type of a DNA sequence is std::vector. | |
template<typename _sequence_container > | |
using | sequence_container_container = concatenated_sequences< _sequence_container > |
The container for sequences is seqan3::concatenated_sequences. | |
using | id_alphabet = char |
The alphabet for an identifier string is char. | |
template<typename _id_alphabet > | |
using | id_container = std::basic_string< _id_alphabet > |
The string type for an identifier is std::basic_string. | |
template<typename _id_container > | |
using | id_container_container = concatenated_sequences< _id_container > |
The container for identifier strings is seqan3::concatenated_sequences. | |
using | quality_alphabet = phred42 |
The alphabet for a quality annotation is seqan3::phred42. | |
template<typename _quality_alphabet > | |
using | quality_container = std::vector< _quality_alphabet > |
The string type for a quality annotation is std::vector. | |
template<typename _quality_container > | |
using | quality_container_container = concatenated_sequences< _quality_container > |
The container for quality annotation strings is seqan3::concatenated_sequences. | |
A traits type that specifies input as amino acids.