compute_kmers.hpp

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// SPDX-FileCopyrightText: 2006-2025, Knut Reinert & Freie Universität Berlin
// SPDX-FileCopyrightText: 2016-2025, Knut Reinert & MPI für molekulare Genetik
// SPDX-License-Identifier: BSD-3-Clause
 
#pragma once
 
#include <cstdint> // for uint64_t
 
#include <hibf/build/build_data.hpp>   // for build_data
#include <hibf/contrib/robin_hood.hpp> // for unordered_flat_set
#include <hibf/layout/layout.hpp>      // for layout
 
namespace seqan::hibf::build
{
 
void compute_kmers(robin_hood::unordered_flat_set<uint64_t> & kmers,
                   build_data const & data,
                   layout::layout::user_bin const & record);
 
} // namespace seqan::hibf::build