Build

Includes all API relevant to build an HIBF from a given layout. More...

Classes
struct	seqan::hibf::build::bin_size_parameters
	Contains parameters for bin_size_in_bits. More...
struct	seqan::hibf::build::build_data
	Contains information used for building. More...

Functions
constexpr size_t	seqan::hibf::build::bin_size_in_bits (bin_size_parameters const &params)
	Computes the bin size.
void	seqan::hibf::build::compute_kmers (robin_hood::unordered_flat_set< uint64_t > &kmers, build_data const &data, layout::layout::user_bin const &record)
	Computes kmers.
seqan::hibf::interleaved_bloom_filter	seqan::hibf::build::construct_ibf (robin_hood::unordered_flat_set< uint64_t > &parent_kmers, robin_hood::unordered_flat_set< uint64_t > &kmers, size_t const number_of_bins, layout::graph::node const &node, build_data &data, bool is_root)
	Constructs an IBF of the HIBF.
void	seqan::hibf::build::insert_into_ibf (robin_hood::unordered_flat_set< uint64_t > const &kmers, size_t const number_of_bins, size_t const bin_index, seqan::hibf::interleaved_bloom_filter &ibf, concurrent_timer &fill_ibf_timer)
	Inserts values into an IBF.
void	seqan::hibf::build::update_parent_kmers (robin_hood::unordered_flat_set< uint64_t > &parent_kmers, robin_hood::unordered_flat_set< uint64_t > const &kmers, concurrent_timer &merge_kmers_timer)
	Updates stored values of the parent IBF.
void	seqan::hibf::build::update_user_bins (std::vector< uint64_t > &technical_bin_to_user_bin_id, layout::layout::user_bin const &record)
	Updates user bins stored in HIBF.

Detailed Description

Includes all API relevant to build an HIBF from a given layout.

Function Documentation

insert_into_ibf()

void seqan::hibf::build::insert_into_ibf	(	robin_hood::unordered_flat_set< uint64_t > const &	kmers,
		size_t const	number_of_bins,
		size_t const	bin_index,
		seqan::hibf::interleaved_bloom_filter &	ibf,
		concurrent_timer &	fill_ibf_timer )

Inserts values into an IBF.

Automatically does naive splitting if number_of_bins > 1.