compute_bin_size.cpp File Reference

Implements raptor::compute_bin_size and raptor::max_bin_count. More...

#include <seqan3/search/views/minimiser_hash.hpp>
#include <hibf/build/bin_size_in_bits.hpp>
#include <raptor/adjust_seed.hpp>
#include <raptor/argument_parsing/compute_bin_size.hpp>
#include <raptor/call_parallel_on_bins.hpp>
#include <raptor/dna4_traits.hpp>
#include <raptor/file_reader.hpp>

Include dependency graph for compute_bin_size.cpp:

Functions
size_t	raptor::compute_bin_size (raptor::build_arguments const &arguments)
size_t	raptor::detail::kmer_count_from_minimiser_files (std::vector< std::vector< std::string > > const &bin_path, uint8_t const threads)
size_t	raptor::detail::kmer_count_from_sequence_files (std::vector< std::vector< std::string > > const &bin_path, uint8_t const threads, seqan3::shape const &shape, uint32_t const window_size)

Detailed Description

Implements raptor::compute_bin_size and raptor::max_bin_count.

Author

Enrico Seiler <enrico.seiler AT fu-berlin.de>