compute_minimiser.cpp File Reference

Implements raptor::compute_minimiser. More...

#include <omp.h>
#include <seqan3/io/sequence_file/input.hpp>
#include <seqan3/search/views/minimiser_hash.hpp>
#include <hibf/contrib/robin_hood.hpp>
#include <hibf/contrib/std/chunk_view.hpp>
#include <hibf/contrib/std/zip_view.hpp>
#include <hibf/misc/divide_and_ceil.hpp>
#include <raptor/adjust_seed.hpp>
#include <raptor/dna4_traits.hpp>
#include <raptor/file_reader.hpp>
#include <raptor/prepare/compute_minimiser.hpp>
#include <raptor/prepare/cutoff.hpp>

Include dependency graph for compute_minimiser.cpp:

Functions
void	raptor::compute_minimiser (prepare_arguments const &arguments)
std::filesystem::path	raptor::get_output_path (std::filesystem::path const &output_dir, std::filesystem::path const &file_name)
void	raptor::write_list_file (prepare_arguments const &arguments)

Detailed Description

Implements raptor::compute_minimiser.

Author

Enrico Seiler <enrico.seiler AT fu-berlin.de>