Collaboration diagram for raptor::search_arguments:

Public Member Functions
raptor::threshold::threshold_parameters	make_threshold_parameters () const noexcept

void	print_timings () const

void	write_timings_to_file () const

Public Attributes
std::vector< std::vector< std::string > >	bin_path {}

bool	cache_thresholds {false}

seqan::hibf::concurrent_timer	complete_search_timer {}

seqan::hibf::concurrent_timer	compute_minimiser_timer {}

uint8_t	errors {0}

double	fpr {0.05}

seqan::hibf::concurrent_timer	generate_results_timer {}

std::filesystem::path	index_file {}

bool	is_hibf {false}

seqan::hibf::concurrent_timer	load_index_timer {}

std::filesystem::path	out_file {"search.out"}

double	p_max {0.15}

seqan::hibf::concurrent_timer	parallel_search_timer {}

uint8_t	parts {1u}

std::filesystem::path	query_file {}

seqan::hibf::concurrent_timer	query_file_io_timer {}

seqan::hibf::concurrent_timer	query_ibf_timer {}

uint64_t	query_length {}

seqan::hibf::concurrent_timer	query_length_timer {}

bool	quiet {false}

seqan3::shape	shape {seqan3::ungapped{20u}}

uint8_t	shape_size {shape.size()}

uint8_t	shape_weight {shape.count()}

double	tau {0.9999}

uint8_t	threads {1u}

double	threshold {std::numeric_limits<double>::quiet_NaN()}

std::filesystem::path	timing_out {}

seqan::hibf::concurrent_timer	wall_clock_timer {}

uint32_t	window_size {20u}

bool	write_time {false}

The documentation for this struct was generated from the following files:

Public Member Functions

Public Attributes