Collaboration diagram for raptor::threshold::forward_strand_minimiser:

Public Member Functions
void	compute (std::vector< seqan3::dna4 > const &text)

	forward_strand_minimiser ()=default
	Defaulted.

	forward_strand_minimiser (forward_strand_minimiser &&)=default
	Defaulted.

	forward_strand_minimiser (forward_strand_minimiser const &)=default
	Defaulted.

	forward_strand_minimiser (window const window_size_, seqan3::shape const shape_)
	Constructs a minimiser from given k-mer, window size and a seed.

forward_strand_minimiser &	operator= (forward_strand_minimiser &&)=default
	Defaulted.

forward_strand_minimiser &	operator= (forward_strand_minimiser const &)=default
	Defaulted.

void	resize (window const window_size_, seqan3::shape const shape_)
	Resize the minimiser.

	~forward_strand_minimiser ()=default
	Defaulted.

Public Attributes
std::vector< uint64_t >	minimiser_begin
	Stores the begin positions of the minimisers.

Private Attributes
std::vector< uint64_t >	forward_hashes {}
	Stores the k-mer hashes of the forward strand.

uint64_t	seed {}
	Random but fixed value to xor k-mers with. Counteracts consecutive minimisers.

seqan3::shape	shape {}
	The shape to use.

uint8_t	shape_size {}
	The size of the shape.

uint64_t	window_size {}
	The window size of the minimiser.

Constructor & Destructor Documentation

◆ forward_strand_minimiser()

raptor::threshold::forward_strand_minimiser::forward_strand_minimiser	(	window const	window_size_,
		seqan3::shape const	shape_ )

inline

Constructs a minimiser from given k-mer, window size and a seed.

Parameters

[in]	window_size_	The window size.
[in]	shape_	The shape.

void raptor::threshold::forward_strand_minimiser::resize	(	window const	window_size_,
		seqan3::shape const	shape_ )

inline

Resize the minimiser.

Parameters

[in]	window_size_	The new window size.
[in]	shape_	The new shape.

The documentation for this struct was generated from the following file: