alignment_configurator.hpp File Reference

Provides seqan3::detail::alignment_selector. More...

#include <functional>
#include <tuple>
#include <utility>
#include <vector>
#include <seqan3/alignment/configuration/align_config_output.hpp>
#include <seqan3/alignment/configuration/align_config_result_type.hpp>
#include <seqan3/alignment/matrix/detail/alignment_score_matrix_one_column.hpp>
#include <seqan3/alignment/matrix/detail/alignment_score_matrix_one_column_banded.hpp>
#include <seqan3/alignment/matrix/detail/alignment_trace_matrix_full.hpp>
#include <seqan3/alignment/matrix/detail/alignment_trace_matrix_full_banded.hpp>
#include <seqan3/alignment/matrix/detail/combined_score_and_trace_matrix.hpp>
#include <seqan3/alignment/matrix/detail/score_matrix_single_column.hpp>
#include <seqan3/alignment/matrix/detail/trace_matrix_full.hpp>
#include <seqan3/alignment/pairwise/align_result_selector.hpp>
#include <seqan3/alignment/pairwise/alignment_algorithm.hpp>
#include <seqan3/alignment/pairwise/alignment_result.hpp>
#include <seqan3/alignment/pairwise/detail/concept.hpp>
#include <seqan3/alignment/pairwise/detail/pairwise_alignment_algorithm.hpp>
#include <seqan3/alignment/pairwise/detail/pairwise_alignment_algorithm_banded.hpp>

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Classes
struct	seqan3::detail::alignment_configurator
	Configures the alignment algorithm given the sequences and the configuration object. More...
struct	seqan3::detail::alignment_contract< range_type, alignment_config_type >
	Provides several contracts to test when configuring the alignment algorithm. More...
struct	seqan3::detail::alignment_configurator::select_find_optimum_policy< traits_t >
	Transformation trait that chooses the correct find optimum policy. More...
struct	seqan3::detail::alignment_configurator::select_gap_policy< traits_t >
	Transformation trait that chooses the correct gap policy. More...
struct	seqan3::detail::alignment_configurator::select_gap_recursion_policy< config_t >
	Selects the gap recursion policy. More...
struct	seqan3::detail::alignment_configurator::select_matrix_policy< traits_t >
	Transformation trait that chooses the correct matrix policy. More...

Namespaces
namespace	seqan3
	The main SeqAn3 namespace.
namespace	seqan3::detail
	The internal SeqAn3 namespace.

Detailed Description

Provides seqan3::detail::alignment_selector.

Author

Rene Rahn <rene.rahn AT fu-berlin.de>