The SeqAn namespace for literals. More...

Functions
Other literals
constexpr cigar::operation	operator""_cigar_operation (char const c) noexcept
	The seqan3::cigar::operation char literal.

template<small_string< 2 > str>
constexpr uint16_t	operator""_tag ()
	The SAM tag literal, such that tags can be used in constant expressions.

constexpr shape	operator""_shape (unsigned long long const value)
	The seqan3::shape literal.

Nucleotide literals
constexpr dna15	operator""_dna15 (char const c) noexcept
	The seqan3::dna15 char literal.

constexpr dna15_vector	operator""_dna15 (char const *s, std::size_t n)
	The seqan3::dna15 string literal.

constexpr dna16sam	operator""_dna16sam (char const c) noexcept
	The seqan3::dna16sam char literal.

constexpr dna16sam_vector	operator""_dna16sam (char const *s, size_t n)
	The seqan3::dna16sam string literal.

constexpr dna3bs	operator""_dna3bs (char const c) noexcept
	The seqan3::dna3bs char literal.

constexpr dna3bs_vector	operator""_dna3bs (char const *s, std::size_t n)
	The seqan3::dna3bs string literal.

constexpr dna4	operator""_dna4 (char const c) noexcept
	The seqan3::dna4 char literal.

constexpr dna4_vector	operator""_dna4 (char const *s, std::size_t n)
	The seqan3::dna4 string literal.

constexpr dna5	operator""_dna5 (char const c) noexcept
	The seqan3::dna5 char literal.

constexpr dna5_vector	operator""_dna5 (char const *s, std::size_t n)
	The seqan3::dna5 string literal.

constexpr rna15	operator""_rna15 (char const c) noexcept
	The seqan3::rna15 char literal.

constexpr rna15_vector	operator""_rna15 (char const *s, std::size_t n)
	The seqan3::rna15 string literal.

constexpr rna4	operator""_rna4 (char const c) noexcept
	The seqan3::rna4 char literal.

constexpr rna4_vector	operator""_rna4 (char const *s, std::size_t n)
	The seqan3::rna4 string literal.

constexpr rna5	operator""_rna5 (char const c) noexcept
	The seqan3::rna5 char literal.

constexpr rna5_vector	operator""_rna5 (char const *s, std::size_t n)
	The seqan3::rna5 string literal.

Quality literals
constexpr phred42	operator""_phred42 (char const c) noexcept
	The seqan3::phred42 char literal.

constexpr phred63	operator""_phred63 (char const c) noexcept
	The seqan3::phred63 char literal.

constexpr phred68solexa	operator""_phred68solexa (char const c) noexcept
	The seqan3::phred68solexa char literal.

constexpr phred94	operator""_phred94 (char const c) noexcept
	The seqan3::phred94 char literal.

Structure literals
constexpr dot_bracket3	operator""_db3 (char const ch) noexcept
	The seqan3::db3 char literal.

constexpr std::vector< dot_bracket3 >	operator""_db3 (char const *str, std::size_t len)
	The seqan3::db3 string literal.

constexpr dssp9	operator""_dssp9 (char const ch) noexcept
	The seqan3::dssp9 char literal.

constexpr std::vector< dssp9 >	operator""_dssp9 (char const *str, std::size_t len)
	The seqan3::dssp9 string literal.

constexpr wuss51	operator""_wuss51 (char const ch) noexcept
	The seqan3::wuss51 char literal.

constexpr std::vector< wuss51 >	operator""_wuss51 (char const *str, std::size_t len)
	The seqan3::wuss51 string literal.

Detailed Description

The SeqAn namespace for literals.

This namespace can be imported to use SeqAn3's literal operators:

// SPDX-FileCopyrightText: 2006-2025 Knut Reinert & Freie Universität Berlin
// SPDX-FileCopyrightText: 2016-2025 Knut Reinert & MPI für molekulare Genetik
// SPDX-License-Identifier: CC0-1.0
 
#include <seqan3/alphabet/nucleotide/dna4.hpp>
 
int main()
{
    using namespace seqan3::literals;
 
    seqan3::dna4 letter = 'A'_dna4;             // identical to assign_char_to('A', letter);
    seqan3::dna4_vector sequence = "ACGT"_dna4; // identical to calling assign_char for each element
}

Function Documentation

◆ operator""_cigar_operation()

constexpr cigar::operation seqan3::literals::operator""_cigar_operation ( char const c )

constexprnoexcept

The seqan3::cigar::operation char literal.

Returns: seqan3::cigar::operation

You can use this char literal to assign a seqan3::cigar_operation character:

// SPDX-FileCopyrightText: 2006-2025 Knut Reinert & Freie Universität Berlin
// SPDX-FileCopyrightText: 2016-2025 Knut Reinert & MPI für molekulare Genetik
// SPDX-License-Identifier: CC0-1.0
 
#include <seqan3/alphabet/cigar/cigar.hpp>
 
int main()
{
    using namespace seqan3::literals;
 
    seqan3::cigar::operation letter1{'M'_cigar_operation};
    auto letter2 = 'M'_cigar_operation;
}

This entity is stable. Since version 3.1.

◆ operator""_db3() [1/2]

constexpr std::vector< dot_bracket3 > seqan3::literals::operator""_db3	(	char const *	str,
		std::size_t	len
	)

constexprprivate

The seqan3::db3 string literal.

Parameters

[in]	str	A pointer to the character string to assign.
[in]	len	The size of the character string to assign.

Returns: std::vector<seqan3::dot_bracket3>

You can use this string literal to easily assign to std::vector<seqan3::dot_bracket3>:

// SPDX-FileCopyrightText: 2006-2025 Knut Reinert & Freie Universität Berlin
// SPDX-FileCopyrightText: 2016-2025 Knut Reinert & MPI für molekulare Genetik
// SPDX-License-Identifier: CC0-1.0
 
#include <seqan3/alphabet/structure/dot_bracket3.hpp>
 
int main()
{
    using namespace seqan3::literals;
 
    std::vector<seqan3::dot_bracket3> sequence1{".(..)."_db3};
    std::vector<seqan3::dot_bracket3> sequence2 = ".(..)."_db3;
    auto sequence3 = ".(..)."_db3;
}

This entity is experimental and subject to change in the future. Experimental since version 3.1.

◆ operator""_db3() [2/2]

constexpr dot_bracket3 seqan3::literals::operator""_db3 ( char const ch )

constexprprivatenoexcept

The seqan3::db3 char literal.

Parameters

[in] ch The character to represent as dot bracket.

Returns: seqan3::dot_bracket3

You can use this char literal to assign a seqan3::dot_bracket3 character:

// SPDX-FileCopyrightText: 2006-2025 Knut Reinert & Freie Universität Berlin
// SPDX-FileCopyrightText: 2016-2025 Knut Reinert & MPI für molekulare Genetik
// SPDX-License-Identifier: CC0-1.0
 
#include <seqan3/alphabet/structure/dot_bracket3.hpp>
 
int main()
{
    using namespace seqan3::literals;
 
    seqan3::dot_bracket3 letter1{'('_db3};
    auto letter2 = '('_db3;
}

This entity is experimental and subject to change in the future. Experimental since version 3.1.

◆ operator""_dna15() [1/2]

constexpr dna15_vector seqan3::literals::operator""_dna15	(	char const *	s,
		std::size_t	n
	)

constexprprivate

The seqan3::dna15 string literal.

Returns: seqan3::dna15_vector

You can use this string literal to easily assign to dna15_vector:

// SPDX-FileCopyrightText: 2006-2025 Knut Reinert & Freie Universität Berlin
// SPDX-FileCopyrightText: 2016-2025 Knut Reinert & MPI für molekulare Genetik
// SPDX-License-Identifier: CC0-1.0
 
// generated from test/snippet/alphabet/nucleotide/@target_alphabet@_literal.cpp.in
 
#include <seqan3/alphabet/nucleotide/dna15.hpp>
 
int main()
{
    using namespace seqan3::literals;
 
    seqan3::dna15_vector sequence1{"ACGTTA"_dna15};
    seqan3::dna15_vector sequence2 = "ACGTTA"_dna15;
    auto sequence3 = "ACGTTA"_dna15;
}

This entity is stable. Since version 3.1.

◆ operator""_dna15() [2/2]

constexpr dna15 seqan3::literals::operator""_dna15 ( char const c )

constexprprivatenoexcept

The seqan3::dna15 char literal.

Returns: seqan3::dna15

You can use this char literal to assign a seqan3::dna15 character:

#include <seqan3/alphabet/nucleotide/dna15.hpp>
 
int main()
{
    using namespace seqan3::literals;
 
    seqan3::dna15 letter1{'A'_dna15};
    auto letter2 = 'A'_dna15;
}

This entity is stable. Since version 3.1.

◆ operator""_dna16sam() [1/2]

constexpr dna16sam_vector seqan3::literals::operator""_dna16sam	(	char const *	s,
		size_t	n
	)

constexprprivate

The seqan3::dna16sam string literal.

Returns: seqan3::dna16sam_vector

Parameters

[in]	s	The string literal to assign from.
[in]	n	The length of the string literal s.

You can use this string literal to easily assign to seqan3::dna16sam_vector:

// SPDX-FileCopyrightText: 2006-2025 Knut Reinert & Freie Universität Berlin
// SPDX-FileCopyrightText: 2016-2025 Knut Reinert & MPI für molekulare Genetik
// SPDX-License-Identifier: CC0-1.0
 
// generated from test/snippet/alphabet/nucleotide/@target_alphabet@_literal.cpp.in
 
#include <seqan3/alphabet/nucleotide/dna16sam.hpp>
 
int main()
{
    using namespace seqan3::literals;
 
    seqan3::dna16sam_vector sequence1{"ACGTTA"_dna16sam};
    seqan3::dna16sam_vector sequence2 = "ACGTTA"_dna16sam;
    auto sequence3 = "ACGTTA"_dna16sam;
}

This entity is stable. Since version 3.1.

◆ operator""_dna16sam() [2/2]

constexpr dna16sam seqan3::literals::operator""_dna16sam ( char const c )

constexprprivatenoexcept

The seqan3::dna16sam char literal.

Returns: seqan3::dna16sam

Parameters

[in] c The character to assign from.

You can use this char literal to assign a seqan3::dna16sam character:

// SPDX-FileCopyrightText: 2006-2025 Knut Reinert & Freie Universität Berlin
// SPDX-FileCopyrightText: 2016-2025 Knut Reinert & MPI für molekulare Genetik
// SPDX-License-Identifier: CC0-1.0
 
// generated from test/snippet/alphabet/nucleotide/@target_alphabet@_char_literal.cpp.in
 
#include <seqan3/alphabet/nucleotide/dna16sam.hpp>
 
int main()
{
    using namespace seqan3::literals;
 
    seqan3::dna16sam letter1{'A'_dna16sam};
    auto letter2 = 'A'_dna16sam;
}

This entity is stable. Since version 3.1.

◆ operator""_dna3bs() [1/2]

constexpr dna3bs_vector seqan3::literals::operator""_dna3bs	(	char const *	s,
		std::size_t	n
	)

constexprprivate

The seqan3::dna3bs string literal.

Returns: seqan3::dna3bs_vector

You can use this string literal to easily assign to dna3bs_vector:

// SPDX-FileCopyrightText: 2006-2025 Knut Reinert & Freie Universität Berlin
// SPDX-FileCopyrightText: 2016-2025 Knut Reinert & MPI für molekulare Genetik
// SPDX-License-Identifier: CC0-1.0
 
// generated from test/snippet/alphabet/nucleotide/@target_alphabet@_literal.cpp.in
 
#include <seqan3/alphabet/nucleotide/dna3bs.hpp>
 
int main()
{
    using namespace seqan3::literals;
 
    seqan3::dna3bs_vector sequence1{"ACGTTA"_dna3bs};
    seqan3::dna3bs_vector sequence2 = "ACGTTA"_dna3bs;
    auto sequence3 = "ACGTTA"_dna3bs;
}

This entity is stable. Since version 3.1.

◆ operator""_dna3bs() [2/2]

constexpr dna3bs seqan3::literals::operator""_dna3bs ( char const c )

constexprprivatenoexcept

The seqan3::dna3bs char literal.

Returns: seqan3::dna3bs

You can use this char literal to assign a seqan3::dna3bs character:

// SPDX-FileCopyrightText: 2006-2025 Knut Reinert & Freie Universität Berlin
// SPDX-FileCopyrightText: 2016-2025 Knut Reinert & MPI für molekulare Genetik
// SPDX-License-Identifier: CC0-1.0
 
// generated from test/snippet/alphabet/nucleotide/@target_alphabet@_char_literal.cpp.in
 
#include <seqan3/alphabet/nucleotide/dna3bs.hpp>
 
int main()
{
    using namespace seqan3::literals;
 
    seqan3::dna3bs letter1{'A'_dna3bs};
    auto letter2 = 'A'_dna3bs;
}

This entity is stable. Since version 3.1.

◆ operator""_dna4() [1/2]

constexpr dna4_vector seqan3::literals::operator""_dna4	(	char const *	s,
		std::size_t	n
	)

constexprprivate

The seqan3::dna4 string literal.

Returns: seqan3::dna4_vector You can use this string literal to easily assign to dna4_vector:
// SPDX-FileCopyrightText: 2006-2025 Knut Reinert & Freie Universität Berlin

// SPDX-FileCopyrightText: 2016-2025 Knut Reinert & MPI für molekulare Genetik

// SPDX-License-Identifier: CC0-1.0

// generated from test/snippet/alphabet/nucleotide/@target_alphabet@_literal.cpp.in

#include <seqan3/alphabet/nucleotide/dna4.hpp>

int main()

{

using namespace seqan3::literals;

seqan3::dna4_vector sequence1{"ACGTTA"_dna4};

seqan3::dna4_vector sequence2 = "ACGTTA"_dna4;

auto sequence3 = "ACGTTA"_dna4;

}

This entity is stable. Since version 3.1.

◆ operator""_dna4() [2/2]

constexpr dna4 seqan3::literals::operator""_dna4 ( char const c )

constexprprivatenoexcept

The seqan3::dna4 char literal.

Returns: seqan3::dna4

You can use this char literal to assign a seqan3::dna4 character:

#include <seqan3/alphabet/nucleotide/dna4.hpp>
 
int main()
{
    using namespace seqan3::literals;
 
    seqan3::dna4 letter1{'A'_dna4};
    auto letter2 = 'A'_dna4;
}

This entity is stable. Since version 3.1.

◆ operator""_dna5() [1/2]

constexpr dna5_vector seqan3::literals::operator""_dna5	(	char const *	s,
		std::size_t	n
	)

constexprprivate

The seqan3::dna5 string literal.

Returns: seqan3::dna5_vector

You can use this string literal to easily assign to dna5_vector:

// SPDX-FileCopyrightText: 2006-2025 Knut Reinert & Freie Universität Berlin
// SPDX-FileCopyrightText: 2016-2025 Knut Reinert & MPI für molekulare Genetik
// SPDX-License-Identifier: CC0-1.0
 
// generated from test/snippet/alphabet/nucleotide/@target_alphabet@_literal.cpp.in
 
#include <seqan3/alphabet/nucleotide/dna5.hpp>
 
int main()
{
    using namespace seqan3::literals;
 
    seqan3::dna5_vector sequence1{"ACGTTA"_dna5};
    seqan3::dna5_vector sequence2 = "ACGTTA"_dna5;
    auto sequence3 = "ACGTTA"_dna5;
}

This entity is stable. Since version 3.1.

◆ operator""_dna5() [2/2]

constexpr dna5 seqan3::literals::operator""_dna5 ( char const c )

constexprprivatenoexcept

The seqan3::dna5 char literal.

Returns: seqan3::dna5

You can use this char literal to assign a seqan3::dna4 character:

#include <seqan3/alphabet/nucleotide/dna4.hpp>
 
int main()
{
    using namespace seqan3::literals;
 
    seqan3::dna4 letter1{'A'_dna4};
    auto letter2 = 'A'_dna4;
}

This entity is stable. Since version 3.1.

◆ operator""_dssp9() [1/2]

constexpr std::vector< dssp9 > seqan3::literals::operator""_dssp9	(	char const *	str,
		std::size_t	len
	)

constexprprivate

The seqan3::dssp9 string literal.

Parameters

[in]	str	A pointer to the character string to assign.
[in]	len	The size of the character string to assign.

Returns: std::vector<seqan3::dssp9>

You can use this string literal to easily assign to std::vector<seqan3::dssp9>:

// SPDX-FileCopyrightText: 2006-2025 Knut Reinert & Freie Universität Berlin
// SPDX-FileCopyrightText: 2016-2025 Knut Reinert & MPI für molekulare Genetik
// SPDX-License-Identifier: CC0-1.0
 
#include <seqan3/alphabet/structure/dssp9.hpp>
 
int main()
{
    using namespace seqan3::literals;
 
    std::vector<seqan3::dssp9> sequence1{"EHHHHT"_dssp9};
    std::vector<seqan3::dssp9> sequence2 = "EHHHHT"_dssp9;
    auto sequence3 = "EHHHHT"_dssp9;
}

This entity is experimental and subject to change in the future. Experimental since version 3.1.

◆ operator""_dssp9() [2/2]

constexpr dssp9 seqan3::literals::operator""_dssp9 ( char const ch )

constexprprivatenoexcept

The seqan3::dssp9 char literal.

Parameters

[in] ch The character to represent as dssp.

Returns: seqan3::dssp9

You can use this char literal to assign a seqan3::dssp9 character:

// SPDX-FileCopyrightText: 2006-2025 Knut Reinert & Freie Universität Berlin
// SPDX-FileCopyrightText: 2016-2025 Knut Reinert & MPI für molekulare Genetik
// SPDX-License-Identifier: CC0-1.0
 
#include <seqan3/alphabet/structure/dssp9.hpp>
 
int main()
{
    using namespace seqan3::literals;
 
    seqan3::dssp9 letter1{'('_dssp9};
    auto letter2 = '('_dssp9;
}

This entity is experimental and subject to change in the future. Experimental since version 3.1.

◆ operator""_phred42()

constexpr phred42 seqan3::literals::operator""_phred42 ( char const c )

constexprnoexcept

The seqan3::phred42 char literal.

Returns: seqan3::phred42

You can use this char literal to assign a seqan3::phred42 character:

// SPDX-FileCopyrightText: 2006-2025 Knut Reinert & Freie Universität Berlin
// SPDX-FileCopyrightText: 2016-2025 Knut Reinert & MPI für molekulare Genetik
// SPDX-License-Identifier: CC0-1.0
 
#include <seqan3/alphabet/quality/phred42.hpp>
 
int main()
{
    using namespace seqan3::literals;
 
    seqan3::phred42 letter1{'!'_phred42};
    auto letter2 = '!'_phred42;
}

This entity is stable. Since version 3.1.

◆ operator""_phred63()

constexpr phred63 seqan3::literals::operator""_phred63 ( char const c )

constexprnoexcept

The seqan3::phred63 char literal.

Returns: seqan3::phred63

You can use this char literal to assign a seqan3::phred63 character:

// SPDX-FileCopyrightText: 2006-2025 Knut Reinert & Freie Universität Berlin
// SPDX-FileCopyrightText: 2016-2025 Knut Reinert & MPI für molekulare Genetik
// SPDX-License-Identifier: CC0-1.0
 
#include <seqan3/alphabet/quality/phred63.hpp>
 
int main()
{
    using namespace seqan3::literals;
 
    seqan3::phred63 letter1{'!'_phred63};
    auto letter2 = '!'_phred63;
}

This entity is stable. Since version 3.1.

◆ operator""_phred68solexa()

constexpr phred68solexa seqan3::literals::operator""_phred68solexa ( char const c )

constexprnoexcept

The seqan3::phred68solexa char literal.

Returns: seqan3::phred68solexa

You can use this char literal to assign a seqan3::phred68solexa character:

// SPDX-FileCopyrightText: 2006-2025 Knut Reinert & Freie Universität Berlin
// SPDX-FileCopyrightText: 2016-2025 Knut Reinert & MPI für molekulare Genetik
// SPDX-License-Identifier: CC0-1.0
 
#include <seqan3/alphabet/quality/phred68solexa.hpp>
 
int main()
{
    using namespace seqan3::literals;
 
    seqan3::phred68solexa letter1{'!'_phred68solexa};
    auto letter2 = '!'_phred68solexa;
}

This entity is stable. Since version 3.1.

◆ operator""_phred94()

constexpr phred94 seqan3::literals::operator""_phred94 ( char const c )

constexprnoexcept

The seqan3::phred94 char literal.

Returns: seqan3::phred94

You can use this char literal to assign a seqan3::phred94 character:

// SPDX-FileCopyrightText: 2006-2025 Knut Reinert & Freie Universität Berlin
// SPDX-FileCopyrightText: 2016-2025 Knut Reinert & MPI für molekulare Genetik
// SPDX-License-Identifier: CC0-1.0
 
#include <seqan3/alphabet/quality/phred94.hpp>
 
int main()
{
    using namespace seqan3::literals;
 
    seqan3::phred94 letter1{'!'_phred94};
    auto letter2 = '!'_phred94;
}

This entity is stable. Since version 3.1.

◆ operator""_rna15() [1/2]

constexpr rna15_vector seqan3::literals::operator""_rna15	(	char const *	s,
		std::size_t	n
	)

constexprprivate

The seqan3::rna15 string literal.

Returns: seqan3::rna15_vector

You can use this string literal to easily assign to rna15_vector:

// SPDX-FileCopyrightText: 2006-2025 Knut Reinert & Freie Universität Berlin
// SPDX-FileCopyrightText: 2016-2025 Knut Reinert & MPI für molekulare Genetik
// SPDX-License-Identifier: CC0-1.0
 
// generated from test/snippet/alphabet/nucleotide/@target_alphabet@_literal.cpp.in
 
#include <seqan3/alphabet/nucleotide/rna15.hpp>
 
int main()
{
    using namespace seqan3::literals;
 
    seqan3::rna15_vector sequence1{"ACGTTA"_rna15};
    seqan3::rna15_vector sequence2 = "ACGTTA"_rna15;
    auto sequence3 = "ACGTTA"_rna15;
}

This entity is stable. Since version 3.1.

◆ operator""_rna15() [2/2]

constexpr rna15 seqan3::literals::operator""_rna15 ( char const c )

constexprprivatenoexcept

The seqan3::rna15 char literal.

Returns: seqan3::rna15

You can use this char literal to assign a seqan3::rna15 character:

#include <seqan3/alphabet/nucleotide/rna15.hpp>
 
int main()
{
    using namespace seqan3::literals;
 
    seqan3::rna15 letter1{'A'_rna15};
    auto letter2 = 'A'_rna15;
}

This entity is stable. Since version 3.1.

◆ operator""_rna4() [1/2]

constexpr rna4_vector seqan3::literals::operator""_rna4	(	char const *	s,
		std::size_t	n
	)

constexprprivate

The seqan3::rna4 string literal.

Returns: seqan3::rna4_vector

You can use this string literal to easily assign to rna4_vector:

// SPDX-FileCopyrightText: 2006-2025 Knut Reinert & Freie Universität Berlin
// SPDX-FileCopyrightText: 2016-2025 Knut Reinert & MPI für molekulare Genetik
// SPDX-License-Identifier: CC0-1.0
 
// generated from test/snippet/alphabet/nucleotide/@target_alphabet@_literal.cpp.in
 
#include <seqan3/alphabet/nucleotide/rna4.hpp>
 
int main()
{
    using namespace seqan3::literals;
 
    seqan3::rna4_vector sequence1{"ACGTTA"_rna4};
    seqan3::rna4_vector sequence2 = "ACGTTA"_rna4;
    auto sequence3 = "ACGTTA"_rna4;
}

This entity is stable. Since version 3.1.

◆ operator""_rna4() [2/2]

constexpr rna4 seqan3::literals::operator""_rna4 ( char const c )

constexprprivatenoexcept

The seqan3::rna4 char literal.

Returns: seqan3::rna4

You can use this char literal to assign a seqan3::rna4 character:

#include <seqan3/alphabet/nucleotide/rna4.hpp>
 
int main()
{
    using namespace seqan3::literals;
 
    seqan3::rna4 letter1{'A'_rna4};
    auto letter2 = 'A'_rna4;
}

This entity is stable. Since version 3.1.

◆ operator""_rna5() [1/2]

constexpr rna5_vector seqan3::literals::operator""_rna5	(	char const *	s,
		std::size_t	n
	)

constexprprivate

The seqan3::rna5 string literal.

Returns: seqan3::rna5_vector

You can use this string literal to easily assign to rna5_vector:

// SPDX-FileCopyrightText: 2006-2025 Knut Reinert & Freie Universität Berlin
// SPDX-FileCopyrightText: 2016-2025 Knut Reinert & MPI für molekulare Genetik
// SPDX-License-Identifier: CC0-1.0
 
// generated from test/snippet/alphabet/nucleotide/@target_alphabet@_literal.cpp.in
 
#include <seqan3/alphabet/nucleotide/rna5.hpp>
 
int main()
{
    using namespace seqan3::literals;
 
    seqan3::rna5_vector sequence1{"ACGTTA"_rna5};
    seqan3::rna5_vector sequence2 = "ACGTTA"_rna5;
    auto sequence3 = "ACGTTA"_rna5;
}

This entity is stable. Since version 3.1.

◆ operator""_rna5() [2/2]

constexpr rna5 seqan3::literals::operator""_rna5 ( char const c )

constexprprivatenoexcept

The seqan3::rna5 char literal.

Returns: seqan3::rna5

You can use this char literal to assign a seqan3::rna5 character:

#include <seqan3/alphabet/nucleotide/rna5.hpp>
 
int main()
{
    using namespace seqan3::literals;
 
    seqan3::rna5 letter1{'A'_rna5};
    auto letter2 = 'A'_rna5;
}

This entity is stable. Since version 3.1.

◆ operator""_shape()

constexpr shape seqan3::literals::operator""_shape ( unsigned long long const value )

constexpr

The seqan3::shape literal.

Parameters

[in] value The unsigned integer to assign.

Returns: seqan3::shape

◆ operator""_wuss51() [1/2]

constexpr std::vector< wuss51 > seqan3::literals::operator""_wuss51	(	char const *	str,
		std::size_t	len
	)

constexprprivate

The seqan3::wuss51 string literal.

Parameters

[in]	str	A pointer to the character string to assign.
[in]	len	The size of the character string to assign.

Returns: std::vector<seqan3::wuss51>

You can use this string literal to easily assign to std::vector<seqan3::wuss51>:

// SPDX-FileCopyrightText: 2006-2025 Knut Reinert & Freie Universität Berlin
// SPDX-FileCopyrightText: 2016-2025 Knut Reinert & MPI für molekulare Genetik
// SPDX-License-Identifier: CC0-1.0
 
#include <seqan3/alphabet/structure/wuss.hpp>
 
int main()
{
    using namespace seqan3::literals;
 
    std::vector<seqan3::wuss51> sequence1{".<..>."_wuss51};
    std::vector<seqan3::wuss51> sequence2 = ".<..>."_wuss51;
    auto sequence3 = ".<..>."_wuss51;
}

This entity is experimental and subject to change in the future. Experimental since version 3.1.

◆ operator""_wuss51() [2/2]

constexpr wuss51 seqan3::literals::operator""_wuss51 ( char const ch )

constexprprivatenoexcept

The seqan3::wuss51 char literal.

Parameters

[in] ch The character to represent as wuss.

Returns: seqan3::wuss51

You can use this char literal to assign a seqan3::wuss51 character:

// SPDX-FileCopyrightText: 2006-2025 Knut Reinert & Freie Universität Berlin
// SPDX-FileCopyrightText: 2016-2025 Knut Reinert & MPI für molekulare Genetik
// SPDX-License-Identifier: CC0-1.0
 
#include <seqan3/alphabet/structure/wuss.hpp>
 
int main()
{
    using namespace seqan3::literals;
 
    seqan3::wuss51 letter1{'('_wuss51};
    auto letter2 = '('_wuss51;
}

This entity is experimental and subject to change in the future. Experimental since version 3.1.

Functions

Detailed Description

Function Documentation

◆ operator""_cigar_operation()

◆ operator""_db3() [1/2]

◆ operator""_db3() [2/2]

◆ operator""_dna15() [1/2]

◆ operator""_dna15() [2/2]

◆ operator""_dna16sam() [1/2]

◆ operator""_dna16sam() [2/2]

◆ operator""_dna3bs() [1/2]

◆ operator""_dna3bs() [2/2]

◆ operator""_dna4() [1/2]

◆ operator""_dna4() [2/2]

◆ operator""_dna5() [1/2]

◆ operator""_dna5() [2/2]

◆ operator""_dssp9() [1/2]

◆ operator""_dssp9() [2/2]

◆ operator""_phred42()

◆ operator""_phred63()

◆ operator""_phred68solexa()

◆ operator""_phred94()

◆ operator""_rna15() [1/2]

◆ operator""_rna15() [2/2]

◆ operator""_rna4() [1/2]

◆ operator""_rna4() [2/2]

◆ operator""_rna5() [1/2]

◆ operator""_rna5() [2/2]

◆ operator""_shape()

◆ operator""_wuss51() [1/2]

◆ operator""_wuss51() [2/2]