Collaboration diagram for raptor::update_arguments:

Public Member Functions
void	print_stats () const
	Prints the number of inserted user bins and of the rebuilds they required to stderr.

Public Attributes
std::filesystem::path	bin_file {}
	The `--insert` argument: a single sequence file, or a file containing file names.

std::vector< std::vector< std::string > >	bin_path {}

bool	disable_partial_rebuild {false}
	Whether to replace every partial rebuild by a full one.

double	fpr {0.05}

size_t	full_rebuilds {}
	The number of full rebuilds performed by raptor::insert_user_bin.

std::filesystem::path	index_file {}
	The index to update. Left untouched; the result is written to `out_path`.

bool	is_hibf {false}

std::filesystem::path	out_path {}

size_t	partial_rebuilds {}
	The number of partial rebuilds performed by raptor::insert_user_bin.

uint8_t	parts {1u}

seqan3::shape	shape {seqan3::ungapped{20u}}

uint8_t	shape_size {shape.size()}

uint8_t	shape_weight {shape.count()}

bool	stats {false}
	Whether to print a summary of the insertion to stderr, see raptor::update_arguments::print_stats.

uint8_t	threads {1u}

std::vector< size_t >	user_bins_to_delete {}
	The IDs of the user bins to delete.

std::vector< std::vector< std::string > >	user_bins_to_insert {}
	The user bins to insert, one entry per user bin.

uint32_t	window_size {20u}

Member Data Documentation

◆ disable_partial_rebuild

bool raptor::update_arguments::disable_partial_rebuild {false}

Whether to replace every partial rebuild by a full one.

A full rebuild yields a better layout, but has to process all user bins instead of only those of one subtree.

size_t raptor::update_arguments::full_rebuilds {}

mutable

The number of full rebuilds performed by raptor::insert_user_bin.

At most one: a full rebuild covers all user bins that have not been inserted yet.

The documentation for this struct was generated from the following files: