Class Specialization
PMSP
Represents the PMSP algorithm of Davila et al.
PMSP |
Specialization of
Metafunctions
Type of the items in the container. (MotifFinder) |
Functions
Displays all found motif candidates. In the case of the Projection Motif Finder the function displays the consensus pattern of the found motif candidate. (MotifFinder) | |
Represents the main function which is used to start the search for noticeable motif patterns. (MotifFinder) |
Remarks
The PMSP algorithm is an improvement of the PMS1 algorithm.
It examines each possible l-mer of the first input sequence, explores its neighborhood
and finally checks whether an l-mer in the neighborhood is a motif instance.
Example Programs
SeqAn - Sequence Analysis Library - www.seqan.de